==40563== Memcheck, a memory error detector ==40563== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40563== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40563== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40563== Parent PID: 24505 ==40563== ==40563== ==40563== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40563== Open file descriptor 12: ==40563== at 0x1032A0FD: pipe (pipe.c:29) ==40563== by 0x1A50107D: ??? ==40563== by 0x135504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40563== by 0x10C25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10BBED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10DACD38: PetscInitialize (pinit.c:924) ==40563== by 0xFB43E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40563== by 0xFB43EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40563== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40563== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40563== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40563== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40563== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40563== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40563== ==40563== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40563== at 0x1032EA9C: __open_nocancel (open64_nocancel.c:39) ==40563== by 0x102B2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40563== by 0xFB80822: ??? ==40563== by 0xFB8096F: ??? ==40563== by 0x135F56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x135F5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x135AB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x135502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40563== by 0x10C25418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10BBED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10DACD38: PetscInitialize (pinit.c:924) ==40563== by 0xFB43E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40563== by 0xFB43EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40563== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40563== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40563== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40563== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40563== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40563== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40563== ==40563== Open file descriptor 145: ==40563== ==40563== ==40563== Open file descriptor 142: ==40563== ==40563== ==40563== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40563== ==40563== ==40563== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40563== ==40563== ==40563== ==40563== HEAP SUMMARY: ==40563== in use at exit: 35,199 bytes in 290 blocks ==40563== total heap usage: 709,627 allocs, 709,337 frees, 395,364,553 bytes allocated ==40563== ==40563== LEAK SUMMARY: ==40563== definitely lost: 0 bytes in 0 blocks ==40563== indirectly lost: 0 bytes in 0 blocks ==40563== possibly lost: 0 bytes in 0 blocks ==40563== still reachable: 56 bytes in 3 blocks ==40563== suppressed: 35,143 bytes in 287 blocks ==40563== Reachable blocks (those to which a pointer was found) are not shown. ==40563== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40563== ==40563== For lists of detected and suppressed errors, rerun with: -s ==40563== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)