==27032== Memcheck, a memory error detector ==27032== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27032== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==27032== Parent PID: 24524 ==27032== ==27032== ==27032== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27032== Open file descriptor 12: ==27032== at 0xF8EF0FD: pipe (pipe.c:29) ==27032== by 0x1A50107D: ??? ==27032== by 0x1469C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27032== by 0xF53C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27032== by 0xF4D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27032== by 0xE1CCD38: PetscInitialize (pinit.c:924) ==27032== by 0xE03BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27032== by 0xE03BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27032== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27032== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27032== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27032== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27032== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27032== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==27032== ==27032== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27032== at 0xF8F3A9C: __open_nocancel (open64_nocancel.c:39) ==27032== by 0xF877BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27032== by 0xE078822: ??? ==27032== by 0xE07896F: ??? ==27032== by 0x147416DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27032== by 0x14741938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27032== by 0x146F7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27032== by 0x1469C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27032== by 0xF53C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27032== by 0xF4D5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27032== by 0xE1CCD38: PetscInitialize (pinit.c:924) ==27032== by 0xE03BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27032== by 0xE03BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27032== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27032== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27032== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27032== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27032== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27032== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==27032== ==27032== Open file descriptor 145: ==27032== ==27032== ==27032== Open file descriptor 142: ==27032== ==27032== ==27032== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==27032== ==27032== ==27032== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27032== ==27032== ==27032== ==27032== HEAP SUMMARY: ==27032== in use at exit: 35,167 bytes in 289 blocks ==27032== total heap usage: 150,280 allocs, 149,991 frees, 18,589,353 bytes allocated ==27032== ==27032== LEAK SUMMARY: ==27032== definitely lost: 0 bytes in 0 blocks ==27032== indirectly lost: 0 bytes in 0 blocks ==27032== possibly lost: 0 bytes in 0 blocks ==27032== still reachable: 24 bytes in 2 blocks ==27032== suppressed: 35,143 bytes in 287 blocks ==27032== Reachable blocks (those to which a pointer was found) are not shown. ==27032== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27032== ==27032== For lists of detected and suppressed errors, rerun with: -s ==27032== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)