==40867== Memcheck, a memory error detector ==40867== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40867== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40867== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info ==40867== Parent PID: 24524 ==40867== ==40867== ==40867== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40867== Open file descriptor 12: ==40867== at 0x118230FD: pipe (pipe.c:29) ==40867== by 0x1A50107D: ??? ==40867== by 0x156B94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40867== by 0x11389418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40867== by 0x11322D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40867== by 0x10019D38: PetscInitialize (pinit.c:924) ==40867== by 0xFB43E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40867== by 0xFB43EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40867== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40867== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40867== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40867== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40867== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40867== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) ==40867== ==40867== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40867== at 0x11827A9C: __open_nocancel (open64_nocancel.c:39) ==40867== by 0x117ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40867== by 0xFB80822: ??? ==40867== by 0xFB8096F: ??? ==40867== by 0x1575E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40867== by 0x1575E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40867== by 0x15714922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40867== by 0x156B92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40867== by 0x11389418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40867== by 0x11322D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40867== by 0x10019D38: PetscInitialize (pinit.c:924) ==40867== by 0xFB43E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40867== by 0xFB43EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40867== by 0x2258F7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40867== by 0x21F2AB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40867== by 0x222B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40867== by 0x222A01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40867== by 0x223097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40867== by 0x21BBD5: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19) ==40867== ==40867== Open file descriptor 145: ==40867== ==40867== ==40867== Open file descriptor 142: ==40867== ==40867== ==40867== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellCycleModelTutorial_valgrind.txt ==40867== ==40867== ==40867== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40867== ==40867== ==40867== ==40867== HEAP SUMMARY: ==40867== in use at exit: 35,126 bytes in 286 blocks ==40867== total heap usage: 8,962,901 allocs, 8,962,615 frees, 859,025,842 bytes allocated ==40867== ==40867== LEAK SUMMARY: ==40867== definitely lost: 0 bytes in 0 blocks ==40867== indirectly lost: 0 bytes in 0 blocks ==40867== possibly lost: 0 bytes in 0 blocks ==40867== still reachable: 56 bytes in 3 blocks ==40867== suppressed: 35,070 bytes in 283 blocks ==40867== Reachable blocks (those to which a pointer was found) are not shown. ==40867== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40867== ==40867== For lists of detected and suppressed errors, rerun with: -s ==40867== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)