==44566== Memcheck, a memory error detector ==44566== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==44566== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==44566== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==44566== Parent PID: 24524 ==44566== ==44566== Warning: invalid file descriptor -1 in syscall close() ==44566== ==44566== FILE DESCRIPTORS: 9 open (3 std) at exit. ==44566== Open file descriptor 12: ==44566== at 0xC2190FD: pipe (pipe.c:29) ==44566== by 0x1444707D: ??? ==44566== by 0x1011E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44566== by 0xBB21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44566== by 0xBABAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44566== by 0x826CD38: PetscInitialize (pinit.c:924) ==44566== by 0xB9E9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44566== by 0xB9E9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44566== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44566== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44566== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44566== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44566== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44566== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==44566== ==44566== Open file descriptor 8: /dev/shm/open_mpi.0000 ==44566== at 0xC21DA9C: __open_nocancel (open64_nocancel.c:39) ==44566== by 0xC1A1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==44566== by 0x8116822: ??? ==44566== by 0x811696F: ??? ==44566== by 0x101C36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44566== by 0x101C3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44566== by 0x10179922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44566== by 0x1011E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44566== by 0xBB21418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44566== by 0xBABAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44566== by 0x826CD38: PetscInitialize (pinit.c:924) ==44566== by 0xB9E9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44566== by 0xB9E9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44566== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44566== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44566== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44566== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44566== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44566== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==44566== ==44566== Open file descriptor 145: ==44566== ==44566== ==44566== Open file descriptor 142: ==44566== ==44566== ==44566== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==44566== ==44566== ==44566== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==44566== ==44566== ==44566== ==44566== HEAP SUMMARY: ==44566== in use at exit: 35,590 bytes in 295 blocks ==44566== total heap usage: 6,597,620 allocs, 6,597,325 frees, 2,685,530,074 bytes allocated ==44566== ==44566== LEAK SUMMARY: ==44566== definitely lost: 0 bytes in 0 blocks ==44566== indirectly lost: 0 bytes in 0 blocks ==44566== possibly lost: 0 bytes in 0 blocks ==44566== still reachable: 24 bytes in 2 blocks ==44566== suppressed: 35,566 bytes in 293 blocks ==44566== Reachable blocks (those to which a pointer was found) are not shown. ==44566== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==44566== ==44566== For lists of detected and suppressed errors, rerun with: -s ==44566== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)