==41398== Memcheck, a memory error detector ==41398== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41398== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41398== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41398== Parent PID: 24524 ==41398== ==41398== ==41398== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41398== Open file descriptor 12: ==41398== at 0x105E00FD: pipe (pipe.c:29) ==41398== by 0x1A50107D: ??? ==41398== by 0x1355B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41398== by 0x10B3C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41398== by 0x10AD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41398== by 0x10CC5D38: PetscInitialize (pinit.c:924) ==41398== by 0xFEE0E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41398== by 0xFEE0EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41398== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41398== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41398== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41398== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41398== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41398== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==41398== ==41398== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41398== at 0x105E4A9C: __open_nocancel (open64_nocancel.c:39) ==41398== by 0x10568BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41398== by 0xFF1D822: ??? ==41398== by 0xFF1D96F: ??? ==41398== by 0x136006DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41398== by 0x13600938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41398== by 0x135B6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41398== by 0x1355B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41398== by 0x10B3C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41398== by 0x10AD5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41398== by 0x10CC5D38: PetscInitialize (pinit.c:924) ==41398== by 0xFEE0E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41398== by 0xFEE0EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41398== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41398== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41398== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41398== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41398== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41398== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==41398== ==41398== Open file descriptor 145: ==41398== ==41398== ==41398== Open file descriptor 142: ==41398== ==41398== ==41398== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==41398== ==41398== ==41398== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41398== ==41398== ==41398== ==41398== HEAP SUMMARY: ==41398== in use at exit: 35,126 bytes in 286 blocks ==41398== total heap usage: 2,078,230 allocs, 2,077,944 frees, 378,027,336 bytes allocated ==41398== ==41398== LEAK SUMMARY: ==41398== definitely lost: 0 bytes in 0 blocks ==41398== indirectly lost: 0 bytes in 0 blocks ==41398== possibly lost: 0 bytes in 0 blocks ==41398== still reachable: 56 bytes in 3 blocks ==41398== suppressed: 35,070 bytes in 283 blocks ==41398== Reachable blocks (those to which a pointer was found) are not shown. ==41398== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41398== ==41398== For lists of detected and suppressed errors, rerun with: -s ==41398== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)