==42153== Memcheck, a memory error detector ==42153== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==42153== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==42153== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==42153== Parent PID: 24524 ==42153== ==42153== ==42153== FILE DESCRIPTORS: 9 open (3 std) at exit. ==42153== Open file descriptor 12: ==42153== at 0x12FBA0FD: pipe (pipe.c:29) ==42153== by 0x1BDC107D: ??? ==42153== by 0x16F254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42153== by 0x128C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42153== by 0x1285BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42153== by 0x6210D38: PetscInitialize (pinit.c:924) ==42153== by 0x12781E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42153== by 0x12781EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42153== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42153== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42153== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42153== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42153== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42153== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==42153== ==42153== Open file descriptor 8: /dev/shm/open_mpi.0000 ==42153== at 0x12FBEA9C: __open_nocancel (open64_nocancel.c:39) ==42153== by 0x12F42BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==42153== by 0x127BE822: ??? ==42153== by 0x127BE96F: ??? ==42153== by 0x16FCA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42153== by 0x16FCA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42153== by 0x16F80922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==42153== by 0x16F252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==42153== by 0x128C2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42153== by 0x1285BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==42153== by 0x6210D38: PetscInitialize (pinit.c:924) ==42153== by 0x12781E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==42153== by 0x12781EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==42153== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==42153== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==42153== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==42153== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==42153== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==42153== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==42153== ==42153== Open file descriptor 145: ==42153== ==42153== ==42153== Open file descriptor 142: ==42153== ==42153== ==42153== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==42153== ==42153== ==42153== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==42153== ==42153== ==42153== ==42153== HEAP SUMMARY: ==42153== in use at exit: 35,295 bytes in 291 blocks ==42153== total heap usage: 1,601,852 allocs, 1,601,561 frees, 127,317,706 bytes allocated ==42153== ==42153== LEAK SUMMARY: ==42153== definitely lost: 0 bytes in 0 blocks ==42153== indirectly lost: 0 bytes in 0 blocks ==42153== possibly lost: 0 bytes in 0 blocks ==42153== still reachable: 136 bytes in 4 blocks ==42153== suppressed: 35,159 bytes in 287 blocks ==42153== Reachable blocks (those to which a pointer was found) are not shown. ==42153== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==42153== ==42153== For lists of detected and suppressed errors, rerun with: -s ==42153== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)