==43515== Memcheck, a memory error detector ==43515== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43515== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43515== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==43515== Parent PID: 23959 ==43515== ==43515== ==43515== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43515== Open file descriptor 12: ==43515== at 0xA8260FD: pipe (pipe.c:29) ==43515== by 0x1438F07D: ??? ==43515== by 0xD9D34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43515== by 0xABF2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43515== by 0xAB8BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43515== by 0xB0CFD38: PetscInitialize (pinit.c:924) ==43515== by 0xA10AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43515== by 0xA10AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43515== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43515== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43515== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43515== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43515== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43515== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43515== ==43515== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43515== at 0xA82AA9C: __open_nocancel (open64_nocancel.c:39) ==43515== by 0xA7AEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43515== by 0xA147822: ??? ==43515== by 0xA14796F: ??? ==43515== by 0xDA786DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43515== by 0xDA78938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43515== by 0xDA2E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43515== by 0xD9D32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43515== by 0xABF2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43515== by 0xAB8BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43515== by 0xB0CFD38: PetscInitialize (pinit.c:924) ==43515== by 0xA10AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43515== by 0xA10AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43515== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43515== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43515== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43515== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43515== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43515== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==43515== ==43515== Open file descriptor 145: ==43515== ==43515== ==43515== Open file descriptor 142: ==43515== ==43515== ==43515== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==43515== ==43515== ==43515== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43515== ==43515== ==43515== ==43515== HEAP SUMMARY: ==43515== in use at exit: 17,425 bytes in 78 blocks ==43515== total heap usage: 817,630 allocs, 817,552 frees, 110,852,029 bytes allocated ==43515== ==43515== LEAK SUMMARY: ==43515== definitely lost: 0 bytes in 0 blocks ==43515== indirectly lost: 0 bytes in 0 blocks ==43515== possibly lost: 0 bytes in 0 blocks ==43515== still reachable: 24 bytes in 2 blocks ==43515== suppressed: 17,401 bytes in 76 blocks ==43515== Reachable blocks (those to which a pointer was found) are not shown. ==43515== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43515== ==43515== For lists of detected and suppressed errors, rerun with: -s ==43515== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 57 from 31)