==43106== Memcheck, a memory error detector ==43106== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43106== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43106== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43106== Parent PID: 23959 ==43106== ==43106== Warning: invalid file descriptor -1 in syscall close() ==43106== ==43106== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43106== Open file descriptor 12: ==43106== at 0xC1630FD: pipe (pipe.c:29) ==43106== by 0x1439007D: ??? ==43106== by 0x1008B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43106== by 0xBA6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43106== by 0xBA04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43106== by 0x826BD38: PetscInitialize (pinit.c:924) ==43106== by 0xB933E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43106== by 0xB933EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43106== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43106== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43106== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43106== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43106== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43106== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==43106== ==43106== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43106== at 0xC167A9C: __open_nocancel (open64_nocancel.c:39) ==43106== by 0xC0EBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43106== by 0x8115822: ??? ==43106== by 0x811596F: ??? ==43106== by 0x101306DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43106== by 0x10130938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43106== by 0x100E6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43106== by 0x1008B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43106== by 0xBA6B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43106== by 0xBA04D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43106== by 0x826BD38: PetscInitialize (pinit.c:924) ==43106== by 0xB933E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43106== by 0xB933EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43106== by 0x14A1CA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43106== by 0x14186D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43106== by 0x144A60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43106== by 0x144900: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43106== by 0x144F97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43106== by 0x13FC45: main (TestMonodomainProblem.cpp:19) ==43106== ==43106== Open file descriptor 145: ==43106== ==43106== ==43106== Open file descriptor 142: ==43106== ==43106== ==43106== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43106== ==43106== ==43106== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43106== ==43106== ==43106== ==43106== HEAP SUMMARY: ==43106== in use at exit: 17,425 bytes in 78 blocks ==43106== total heap usage: 5,753,317 allocs, 5,753,239 frees, 2,030,036,253 bytes allocated ==43106== ==43106== LEAK SUMMARY: ==43106== definitely lost: 0 bytes in 0 blocks ==43106== indirectly lost: 0 bytes in 0 blocks ==43106== possibly lost: 0 bytes in 0 blocks ==43106== still reachable: 24 bytes in 2 blocks ==43106== suppressed: 17,401 bytes in 76 blocks ==43106== Reachable blocks (those to which a pointer was found) are not shown. ==43106== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43106== ==43106== For lists of detected and suppressed errors, rerun with: -s ==43106== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 125 from 31)