==39922== Memcheck, a memory error detector ==39922== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39922== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39922== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39922== Parent PID: 23959 ==39922== ==39922== ==39922== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39922== Open file descriptor 12: ==39922== at 0x10D000FD: pipe (pipe.c:29) ==39922== by 0x1970507D: ??? ==39922== by 0x14CB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39922== by 0x1094D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39922== by 0x108E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39922== by 0xF5DDD38: PetscInitialize (pinit.c:924) ==39922== by 0xF149E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39922== by 0xF149EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39922== by 0x121CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39922== by 0x11D533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39922== by 0x11F8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39922== by 0x11F7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39922== by 0x11FDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39922== by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==39922== ==39922== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39922== at 0x10D04A9C: __open_nocancel (open64_nocancel.c:39) ==39922== by 0x10C88BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39922== by 0xF186822: ??? ==39922== by 0xF18696F: ??? ==39922== by 0x14D5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39922== by 0x14D5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39922== by 0x14D14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39922== by 0x14CB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39922== by 0x1094D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39922== by 0x108E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39922== by 0xF5DDD38: PetscInitialize (pinit.c:924) ==39922== by 0xF149E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39922== by 0xF149EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39922== by 0x121CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39922== by 0x11D533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39922== by 0x11F8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39922== by 0x11F7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39922== by 0x11FDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39922== by 0x11BD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==39922== ==39922== Open file descriptor 145: ==39922== ==39922== ==39922== Open file descriptor 142: ==39922== ==39922== ==39922== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==39922== ==39922== ==39922== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39922== ==39922== ==39922== ==39922== HEAP SUMMARY: ==39922== in use at exit: 16,961 bytes in 69 blocks ==39922== total heap usage: 579,971 allocs, 579,902 frees, 176,958,237 bytes allocated ==39922== ==39922== LEAK SUMMARY: ==39922== definitely lost: 0 bytes in 0 blocks ==39922== indirectly lost: 0 bytes in 0 blocks ==39922== possibly lost: 0 bytes in 0 blocks ==39922== still reachable: 56 bytes in 3 blocks ==39922== suppressed: 16,905 bytes in 66 blocks ==39922== Reachable blocks (those to which a pointer was found) are not shown. ==39922== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39922== ==39922== For lists of detected and suppressed errors, rerun with: -s ==39922== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)