==40789== Memcheck, a memory error detector ==40789== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40789== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40789== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40789== Parent PID: 23959 ==40789== ==40789== ==40789== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40789== Open file descriptor 12: ==40789== at 0x125C70FD: pipe (pipe.c:29) ==40789== by 0x1B3CE07D: ??? ==40789== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40789== by 0x11ECF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x11E68D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x6217D38: PetscInitialize (pinit.c:924) ==40789== by 0x11D8EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40789== by 0x11D8EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40789== by 0x121DA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40789== by 0x11D613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40789== by 0x11F8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40789== by 0x11F7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40789== by 0x11FDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40789== by 0x11BE15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40789== ==40789== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40789== at 0x125CBA9C: __open_nocancel (open64_nocancel.c:39) ==40789== by 0x1254FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40789== by 0x11DCB822: ??? ==40789== by 0x11DCB96F: ??? ==40789== by 0x155C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x155C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x1557E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40789== by 0x11ECF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x11E68D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x6217D38: PetscInitialize (pinit.c:924) ==40789== by 0x11D8EE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40789== by 0x11D8EEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40789== by 0x121DA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40789== by 0x11D613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40789== by 0x11F8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40789== by 0x11F7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40789== by 0x11FDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40789== by 0x11BE15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40789== ==40789== Open file descriptor 145: ==40789== ==40789== ==40789== Open file descriptor 142: ==40789== ==40789== ==40789== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40789== ==40789== ==40789== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40789== ==40789== ==40789== ==40789== HEAP SUMMARY: ==40789== in use at exit: 17,130 bytes in 74 blocks ==40789== total heap usage: 719,479 allocs, 719,405 frees, 57,556,027 bytes allocated ==40789== ==40789== LEAK SUMMARY: ==40789== definitely lost: 0 bytes in 0 blocks ==40789== indirectly lost: 0 bytes in 0 blocks ==40789== possibly lost: 0 bytes in 0 blocks ==40789== still reachable: 136 bytes in 4 blocks ==40789== suppressed: 16,994 bytes in 70 blocks ==40789== Reachable blocks (those to which a pointer was found) are not shown. ==40789== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40789== ==40789== For lists of detected and suppressed errors, rerun with: -s ==40789== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)