==40036== Memcheck, a memory error detector ==40036== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40036== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40036== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40036== Parent PID: 23959 ==40036== ==40036== ==40036== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40036== Open file descriptor 12: ==40036== at 0x10DE70FD: pipe (pipe.c:29) ==40036== by 0x1970507D: ??? ==40036== by 0x14CB94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40036== by 0x1094D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40036== by 0x108E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40036== by 0xF5DDD38: PetscInitialize (pinit.c:924) ==40036== by 0xF149E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40036== by 0xF149EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40036== by 0x12A8A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40036== by 0x125A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40036== by 0x1280AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40036== by 0x127F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40036== by 0x1285E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40036== by 0x123E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40036== ==40036== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40036== at 0x10DEBA9C: __open_nocancel (open64_nocancel.c:39) ==40036== by 0x10D6FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40036== by 0xF186822: ??? ==40036== by 0xF18696F: ??? ==40036== by 0x14D5E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40036== by 0x14D5E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40036== by 0x14D14922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40036== by 0x14CB92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40036== by 0x1094D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40036== by 0x108E6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40036== by 0xF5DDD38: PetscInitialize (pinit.c:924) ==40036== by 0xF149E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40036== by 0xF149EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40036== by 0x12A8A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40036== by 0x125A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40036== by 0x1280AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40036== by 0x127F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40036== by 0x1285E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40036== by 0x123E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40036== ==40036== Open file descriptor 145: ==40036== ==40036== ==40036== Open file descriptor 142: ==40036== ==40036== ==40036== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40036== ==40036== ==40036== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40036== ==40036== ==40036== ==40036== HEAP SUMMARY: ==40036== in use at exit: 16,961 bytes in 69 blocks ==40036== total heap usage: 783,677 allocs, 783,608 frees, 40,358,495 bytes allocated ==40036== ==40036== LEAK SUMMARY: ==40036== definitely lost: 0 bytes in 0 blocks ==40036== indirectly lost: 0 bytes in 0 blocks ==40036== possibly lost: 0 bytes in 0 blocks ==40036== still reachable: 56 bytes in 3 blocks ==40036== suppressed: 16,905 bytes in 66 blocks ==40036== Reachable blocks (those to which a pointer was found) are not shown. ==40036== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40036== ==40036== For lists of detected and suppressed errors, rerun with: -s ==40036== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)