==25746== Memcheck, a memory error detector ==25746== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25746== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25746== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25746== Parent PID: 23959 ==25746== ==25746== ==25746== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25746== Open file descriptor 12: ==25746== at 0xDB660FD: pipe (pipe.c:29) ==25746== by 0x1970507D: ??? ==25746== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25746== by 0xFE3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25746== by 0xFDD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25746== by 0xFF85D38: PetscInitialize (pinit.c:924) ==25746== by 0xD769E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25746== by 0xD769EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25746== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25746== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25746== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25746== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25746== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25746== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25746== ==25746== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25746== at 0xDB6AA9C: __open_nocancel (open64_nocancel.c:39) ==25746== by 0xDAEEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25746== by 0xD7A6822: ??? ==25746== by 0xD7A696F: ??? ==25746== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25746== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25746== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25746== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25746== by 0xFE3E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25746== by 0xFDD7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25746== by 0xFF85D38: PetscInitialize (pinit.c:924) ==25746== by 0xD769E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25746== by 0xD769EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25746== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25746== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25746== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25746== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25746== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25746== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25746== ==25746== Open file descriptor 145: ==25746== ==25746== ==25746== Open file descriptor 142: ==25746== ==25746== ==25746== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25746== ==25746== ==25746== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25746== ==25746== ==25746== ==25746== HEAP SUMMARY: ==25746== in use at exit: 17,002 bytes in 72 blocks ==25746== total heap usage: 41,712 allocs, 41,640 frees, 7,145,104 bytes allocated ==25746== ==25746== LEAK SUMMARY: ==25746== definitely lost: 0 bytes in 0 blocks ==25746== indirectly lost: 0 bytes in 0 blocks ==25746== possibly lost: 0 bytes in 0 blocks ==25746== still reachable: 24 bytes in 2 blocks ==25746== suppressed: 16,978 bytes in 70 blocks ==25746== Reachable blocks (those to which a pointer was found) are not shown. ==25746== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25746== ==25746== For lists of detected and suppressed errors, rerun with: -s ==25746== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)