==40191== Memcheck, a memory error detector ==40191== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40191== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40191== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40191== Parent PID: 23959 ==40191== ==40191== ==40191== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40191== Open file descriptor 12: ==40191== at 0x1284C0FD: pipe (pipe.c:29) ==40191== by 0x1B3CD07D: ??? ==40191== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40191== by 0x12154418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40191== by 0x120EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40191== by 0x627ED38: PetscInitialize (pinit.c:924) ==40191== by 0x12036E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40191== by 0x12036EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40191== by 0x138AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40191== by 0x13333D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40191== by 0x1360EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40191== by 0x135F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40191== by 0x136623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40191== by 0x131765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40191== ==40191== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40191== at 0x12850A9C: __open_nocancel (open64_nocancel.c:39) ==40191== by 0x127D4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40191== by 0x6128822: ??? ==40191== by 0x612896F: ??? ==40191== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40191== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40191== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40191== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40191== by 0x12154418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40191== by 0x120EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40191== by 0x627ED38: PetscInitialize (pinit.c:924) ==40191== by 0x12036E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40191== by 0x12036EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40191== by 0x138AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40191== by 0x13333D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40191== by 0x1360EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40191== by 0x135F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40191== by 0x136623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40191== by 0x131765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40191== ==40191== Open file descriptor 145: ==40191== ==40191== ==40191== Open file descriptor 142: ==40191== ==40191== ==40191== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40191== ==40191== ==40191== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40191== ==40191== ==40191== ==40191== HEAP SUMMARY: ==40191== in use at exit: 17,018 bytes in 72 blocks ==40191== total heap usage: 503,599 allocs, 503,527 frees, 215,012,014 bytes allocated ==40191== ==40191== LEAK SUMMARY: ==40191== definitely lost: 0 bytes in 0 blocks ==40191== indirectly lost: 0 bytes in 0 blocks ==40191== possibly lost: 0 bytes in 0 blocks ==40191== still reachable: 24 bytes in 2 blocks ==40191== suppressed: 16,994 bytes in 70 blocks ==40191== Reachable blocks (those to which a pointer was found) are not shown. ==40191== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40191== ==40191== For lists of detected and suppressed errors, rerun with: -s ==40191== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)