==40943== Memcheck, a memory error detector ==40943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40943== Parent PID: 24308 ==40943== ==40943== ==40943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40943== Open file descriptor 12: ==40943== at 0x10DBD0FD: pipe (pipe.c:29) ==40943== by 0x196DC07D: ??? ==40943== by 0x14C8A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40943== by 0x10923418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x108BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0xF5B3D38: PetscInitialize (pinit.c:924) ==40943== by 0xF1207A3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40943== by 0xF1207F1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40943== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40943== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40943== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40943== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40943== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40943== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40943== ==40943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40943== at 0x10DC1A9C: __open_nocancel (open64_nocancel.c:39) ==40943== by 0x10D45BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40943== by 0xF15C822: ??? ==40943== by 0xF15C96F: ??? ==40943== by 0x14D2F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0x14D2F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0x14CE5922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0x14C8A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40943== by 0x10923418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x108BCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0xF5B3D38: PetscInitialize (pinit.c:924) ==40943== by 0xF1207A3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40943== by 0xF1207F1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40943== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40943== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40943== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40943== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40943== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40943== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40943== ==40943== Open file descriptor 145: ==40943== ==40943== ==40943== Open file descriptor 142: ==40943== ==40943== ==40943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40943== ==40943== ==40943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40943== ==40943== ==40943== ==40943== HEAP SUMMARY: ==40943== in use at exit: 35,199 bytes in 290 blocks ==40943== total heap usage: 1,383,754 allocs, 1,383,464 frees, 67,632,140 bytes allocated ==40943== ==40943== LEAK SUMMARY: ==40943== definitely lost: 0 bytes in 0 blocks ==40943== indirectly lost: 0 bytes in 0 blocks ==40943== possibly lost: 0 bytes in 0 blocks ==40943== still reachable: 56 bytes in 3 blocks ==40943== suppressed: 35,143 bytes in 287 blocks ==40943== Reachable blocks (those to which a pointer was found) are not shown. ==40943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40943== ==40943== For lists of detected and suppressed errors, rerun with: -s ==40943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)