==40417== Memcheck, a memory error detector ==40417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40417== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40417== Parent PID: 24136 ==40417== ==40417== ==40417== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40417== Open file descriptor 12: ==40417== at 0x125A50FD: pipe (pipe.c:29) ==40417== by 0x1B3AD07D: ??? ==40417== by 0x165254CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40417== by 0x11EAD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40417== by 0x11E46D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40417== by 0x6210D38: PetscInitialize (pinit.c:924) ==40417== by 0x11D6CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40417== by 0x11D6CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40417== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40417== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40417== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40417== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40417== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40417== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40417== ==40417== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40417== at 0x125A9A9C: __open_nocancel (open64_nocancel.c:39) ==40417== by 0x1252DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40417== by 0x11DA9822: ??? ==40417== by 0x11DA996F: ??? ==40417== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40417== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40417== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40417== by 0x165252DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40417== by 0x11EAD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40417== by 0x11E46D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40417== by 0x6210D38: PetscInitialize (pinit.c:924) ==40417== by 0x11D6CE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40417== by 0x11D6CEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40417== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40417== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40417== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40417== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40417== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40417== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40417== ==40417== Open file descriptor 145: ==40417== ==40417== ==40417== Open file descriptor 142: ==40417== ==40417== ==40417== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40417== ==40417== ==40417== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40417== ==40417== ==40417== ==40417== HEAP SUMMARY: ==40417== in use at exit: 35,295 bytes in 291 blocks ==40417== total heap usage: 37,689 allocs, 37,398 frees, 7,876,407 bytes allocated ==40417== ==40417== LEAK SUMMARY: ==40417== definitely lost: 0 bytes in 0 blocks ==40417== indirectly lost: 0 bytes in 0 blocks ==40417== possibly lost: 0 bytes in 0 blocks ==40417== still reachable: 136 bytes in 4 blocks ==40417== suppressed: 35,159 bytes in 287 blocks ==40417== Reachable blocks (those to which a pointer was found) are not shown. ==40417== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40417== ==40417== For lists of detected and suppressed errors, rerun with: -s ==40417== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)