==40352== Memcheck, a memory error detector ==40352== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40352== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40352== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40352== Parent PID: 24136 ==40352== ==40352== ==40352== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40352== Open file descriptor 12: ==40352== at 0x1086C0FD: pipe (pipe.c:29) ==40352== by 0x1B3AE07D: ??? ==40352== by 0x155474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40352== by 0x104B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40352== by 0x10452D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40352== by 0x6277D38: PetscInitialize (pinit.c:924) ==40352== by 0x1039BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40352== by 0x1039BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40352== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40352== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40352== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40352== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40352== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40352== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40352== ==40352== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40352== at 0x10870A9C: __open_nocancel (open64_nocancel.c:39) ==40352== by 0x107F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40352== by 0x6121822: ??? ==40352== by 0x612196F: ??? ==40352== by 0x155EC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40352== by 0x155EC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40352== by 0x155A2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40352== by 0x155472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40352== by 0x104B9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40352== by 0x10452D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40352== by 0x6277D38: PetscInitialize (pinit.c:924) ==40352== by 0x1039BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40352== by 0x1039BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40352== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40352== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40352== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40352== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40352== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40352== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40352== ==40352== Open file descriptor 145: ==40352== ==40352== ==40352== Open file descriptor 142: ==40352== ==40352== ==40352== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40352== ==40352== ==40352== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40352== ==40352== ==40352== ==40352== HEAP SUMMARY: ==40352== in use at exit: 35,183 bytes in 289 blocks ==40352== total heap usage: 169,370 allocs, 169,081 frees, 88,837,571 bytes allocated ==40352== ==40352== LEAK SUMMARY: ==40352== definitely lost: 0 bytes in 0 blocks ==40352== indirectly lost: 0 bytes in 0 blocks ==40352== possibly lost: 0 bytes in 0 blocks ==40352== still reachable: 24 bytes in 2 blocks ==40352== suppressed: 35,159 bytes in 287 blocks ==40352== Reachable blocks (those to which a pointer was found) are not shown. ==40352== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40352== ==40352== For lists of detected and suppressed errors, rerun with: -s ==40352== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)