==43475== Memcheck, a memory error detector ==43475== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==43475== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==43475== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info ==43475== Parent PID: 26574 ==43475== ==43475== ==43475== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==43475== Open file descriptor 10: /dev/shm/open_mpi.0000 ==43475== at 0xCACA536: __open_nocancel (open64_nocancel.c:39) ==43475== by 0xCA4EBE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==43475== by 0x1133189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11331A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11330C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11330F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11200159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0xCE140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xDDFF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==43475== by 0xC59DBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43475== by 0xC59DC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43475== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43475== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43475== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43475== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43475== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43475== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==43475== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==43475== Open file descriptor 9: ==43475== at 0xCAD896B: eventfd (syscall-template.S:120) ==43475== by 0x11391188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x112F60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x112F61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11200120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0xCE140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xDDFF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==43475== by 0xC59DBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43475== by 0xC59DC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43475== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43475== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43475== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43475== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43475== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43475== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==43475== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==43475== Open file descriptor 8: ==43475== at 0xCAC92BB: pipe2 (syscall-template.S:120) ==43475== by 0x11390F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x11393579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x11393774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x112F60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x112F61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11200120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0xCE140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xDDFF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==43475== by 0xC59DBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43475== by 0xC59DC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43475== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43475== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43475== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43475== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43475== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43475== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==43475== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==43475== Open file descriptor 7: ==43475== at 0xCAC92BB: pipe2 (syscall-template.S:120) ==43475== by 0x11390F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x11393579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x11393774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x112F60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x112F61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11200120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0xCE140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xDDFF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==43475== by 0xC59DBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43475== by 0xC59DC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43475== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43475== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43475== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43475== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43475== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43475== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==43475== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==43475== Open file descriptor 4: ==43475== at 0xCAD946B: epoll_create1 (syscall-template.S:120) ==43475== by 0x113936FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x1138F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==43475== by 0x112F60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x112F61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0x11200120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==43475== by 0xCE140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xCE4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==43475== by 0xDDFF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==43475== by 0xC59DBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43475== by 0xC59DC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43475== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43475== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43475== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43475== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43475== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43475== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==43475== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==43475== ==43475== HEAP SUMMARY: ==43475== in use at exit: 101,665 bytes in 585 blocks ==43475== total heap usage: 2,011,590 allocs, 2,011,005 frees, 619,932,230 bytes allocated ==43475== ==43475== LEAK SUMMARY: ==43475== definitely lost: 0 bytes in 0 blocks ==43475== indirectly lost: 0 bytes in 0 blocks ==43475== possibly lost: 0 bytes in 0 blocks ==43475== still reachable: 11,957 bytes in 44 blocks ==43475== suppressed: 89,708 bytes in 541 blocks ==43475== Reachable blocks (those to which a pointer was found) are not shown. ==43475== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43475== ==43475== For lists of detected and suppressed errors, rerun with: -s ==43475== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 117 from 34)