==26951== Memcheck, a memory error detector ==26951== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==26951== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==26951== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestEdge -malloc_debug -malloc_dump -memory_info ==26951== Parent PID: 26574 ==26951== ==26951== ==26951== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==26951== Open file descriptor 10: /dev/shm/open_mpi.0000 ==26951== at 0xA8B9536: __open_nocancel (open64_nocancel.c:39) ==26951== by 0xA83DBE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==26951== by 0xF89B89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF89BA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF89AC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF89AF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF76A159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0x7EC00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EBD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EF7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x6EC1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26951== by 0x6569BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26951== by 0x6569C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26951== by 0x40527F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26951== by 0x404C481: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26951== by 0x404F93E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26951== by 0x404F7D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26951== by 0x404FECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26951== by 0x404A8C8: main (TestEdge.cpp:18) ==26951== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26951== Open file descriptor 9: ==26951== at 0xA8C796B: eventfd (syscall-template.S:120) ==26951== by 0xF8FB188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F9395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F9704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F99F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF8601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF76A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0x7EC00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EBD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EF7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x6EC1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26951== by 0x6569BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26951== by 0x6569C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26951== by 0x40527F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26951== by 0x404C481: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26951== by 0x404F93E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26951== by 0x404F7D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26951== by 0x404FECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26951== by 0x404A8C8: main (TestEdge.cpp:18) ==26951== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26951== Open file descriptor 8: ==26951== at 0xA8B82BB: pipe2 (syscall-template.S:120) ==26951== by 0xF8FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF8601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF76A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0x7EC00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EBD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EF7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x6EC1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26951== by 0x6569BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26951== by 0x6569C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26951== by 0x40527F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26951== by 0x404C481: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26951== by 0x404F93E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26951== by 0x404F7D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26951== by 0x404FECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26951== by 0x404A8C8: main (TestEdge.cpp:18) ==26951== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26951== Open file descriptor 7: ==26951== at 0xA8B82BB: pipe2 (syscall-template.S:120) ==26951== by 0xF8FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF8601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF76A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0x7EC00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EBD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EF7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x6EC1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26951== by 0x6569BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26951== by 0x6569C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26951== by 0x40527F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26951== by 0x404C481: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26951== by 0x404F93E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26951== by 0x404F7D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26951== by 0x404FECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26951== by 0x404A8C8: main (TestEdge.cpp:18) ==26951== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26951== Open file descriptor 4: ==26951== at 0xA8C846B: epoll_create1 (syscall-template.S:120) ==26951== by 0xF8FD6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26951== by 0xF8600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF8601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0xF76A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26951== by 0x7EC00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EC62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EBD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x7EF7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26951== by 0x6EC1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26951== by 0x6569BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26951== by 0x6569C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26951== by 0x40527F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26951== by 0x404C481: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26951== by 0x404F93E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26951== by 0x404F7D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26951== by 0x404FECB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26951== by 0x404A8C8: main (TestEdge.cpp:18) ==26951== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26951== ==26951== HEAP SUMMARY: ==26951== in use at exit: 101,229 bytes in 580 blocks ==26951== total heap usage: 27,434 allocs, 26,854 frees, 8,431,095 bytes allocated ==26951== ==26951== LEAK SUMMARY: ==26951== definitely lost: 0 bytes in 0 blocks ==26951== indirectly lost: 0 bytes in 0 blocks ==26951== possibly lost: 0 bytes in 0 blocks ==26951== still reachable: 11,893 bytes in 44 blocks ==26951== suppressed: 89,336 bytes in 536 blocks ==26951== Reachable blocks (those to which a pointer was found) are not shown. ==26951== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26951== ==26951== For lists of detected and suppressed errors, rerun with: -s ==26951== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)