==27384== Memcheck, a memory error detector ==27384== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==27384== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==27384== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestFineCoarseMeshPair -malloc_debug -malloc_dump -memory_info ==27384== Parent PID: 26574 ==27384== ==27384== ==27384== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==27384== Open file descriptor 10: /dev/shm/open_mpi.0000 ==27384== at 0x8F63536: __open_nocancel (open64_nocancel.c:39) ==27384== by 0x8EE7BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==27384== by 0xD73789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD737A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD736C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD736F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD606159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0x91DF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91DC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x9216627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0xA1CA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27384== by 0x6870BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27384== by 0x6870C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27384== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27384== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27384== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27384== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27384== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27384== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==27384== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27384== Open file descriptor 9: ==27384== at 0x8F7196B: eventfd (syscall-template.S:120) ==27384== by 0xD797188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD795395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD795704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD7959F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD6FC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD6FC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD606120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0x91DF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91DC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x9216627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0xA1CA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27384== by 0x6870BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27384== by 0x6870C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27384== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27384== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27384== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27384== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27384== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27384== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==27384== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27384== Open file descriptor 8: ==27384== at 0x8F622BB: pipe2 (syscall-template.S:120) ==27384== by 0xD796F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD799579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD799774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD7958AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD6FC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD6FC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD606120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0x91DF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91DC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x9216627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0xA1CA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27384== by 0x6870BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27384== by 0x6870C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27384== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27384== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27384== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27384== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27384== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27384== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==27384== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27384== Open file descriptor 7: ==27384== at 0x8F622BB: pipe2 (syscall-template.S:120) ==27384== by 0xD796F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD799579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD799774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD7958AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD6FC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD6FC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD606120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0x91DF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91DC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x9216627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0xA1CA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27384== by 0x6870BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27384== by 0x6870C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27384== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27384== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27384== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27384== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27384== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27384== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==27384== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27384== Open file descriptor 6: ==27384== at 0x8F7246B: epoll_create1 (syscall-template.S:120) ==27384== by 0xD7996FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD7958AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27384== by 0xD6FC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD6FC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0xD606120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27384== by 0x91DF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91E52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x91DC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0x9216627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27384== by 0xA1CA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27384== by 0x6870BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27384== by 0x6870C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27384== by 0x401A4F4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27384== by 0x4014E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27384== by 0x4017F3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27384== by 0x4017D62: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27384== by 0x401850B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27384== by 0x4012E38: main (TestFineCoarseMeshPair.cpp:19) ==27384== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27384== ==27384== HEAP SUMMARY: ==27384== in use at exit: 101,259 bytes in 580 blocks ==27384== total heap usage: 1,527,017 allocs, 1,526,437 frees, 149,752,310 bytes allocated ==27384== ==27384== LEAK SUMMARY: ==27384== definitely lost: 0 bytes in 0 blocks ==27384== indirectly lost: 0 bytes in 0 blocks ==27384== possibly lost: 0 bytes in 0 blocks ==27384== still reachable: 11,909 bytes in 44 blocks ==27384== suppressed: 89,350 bytes in 536 blocks ==27384== Reachable blocks (those to which a pointer was found) are not shown. ==27384== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27384== ==27384== For lists of detected and suppressed errors, rerun with: -s ==27384== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)