==43243== Memcheck, a memory error detector
==43243== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==43243== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==43243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestMultiLobeAirwayGenerator -malloc_debug -malloc_dump -memory_info
==43243== Parent PID: 26574
==43243== 
==43243== 
==43243== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==43243== Open file descriptor 10: /dev/shm/open_mpi.0000
==43243==    at 0xC367536: __open_nocancel (open64_nocancel.c:39)
==43243==    by 0xC2EBBE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==43243==    by 0x10E4589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E45A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E44C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E44F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10D14159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0xBB1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0x5251446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43243==    by 0xBA55BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43243==    by 0xBA55C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43243==    by 0x4012D73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43243==    by 0x400DB01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43243==    by 0x4010BCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43243==    by 0x40109F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43243==    by 0x401119B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43243==    by 0x400BB38: main (TestMultiLobeAirwayGenerator.cpp:19)
==43243== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43243== Open file descriptor 9:
==43243==    at 0xC37596B: eventfd (syscall-template.S:120)
==43243==    by 0x10EA5188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA3395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA3704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA39F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10E0A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E0A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10D14120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0xBB1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0x5251446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43243==    by 0xBA55BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43243==    by 0xBA55C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43243==    by 0x4012D73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43243==    by 0x400DB01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43243==    by 0x4010BCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43243==    by 0x40109F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43243==    by 0x401119B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43243==    by 0x400BB38: main (TestMultiLobeAirwayGenerator.cpp:19)
==43243== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43243== Open file descriptor 8:
==43243==    at 0xC3662BB: pipe2 (syscall-template.S:120)
==43243==    by 0x10EA4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10E0A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E0A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10D14120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0xBB1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0x5251446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43243==    by 0xBA55BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43243==    by 0xBA55C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43243==    by 0x4012D73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43243==    by 0x400DB01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43243==    by 0x4010BCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43243==    by 0x40109F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43243==    by 0x401119B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43243==    by 0x400BB38: main (TestMultiLobeAirwayGenerator.cpp:19)
==43243== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43243== Open file descriptor 7:
==43243==    at 0xC3662BB: pipe2 (syscall-template.S:120)
==43243==    by 0x10EA4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10E0A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E0A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10D14120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0xBB1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0x5251446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43243==    by 0xBA55BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43243==    by 0xBA55C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43243==    by 0x4012D73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43243==    by 0x400DB01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43243==    by 0x4010BCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43243==    by 0x40109F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43243==    by 0x401119B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43243==    by 0x400BB38: main (TestMultiLobeAirwayGenerator.cpp:19)
==43243== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43243== Open file descriptor 4:
==43243==    at 0xC37646B: epoll_create1 (syscall-template.S:120)
==43243==    by 0x10EA76FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10EA38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43243==    by 0x10E0A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10E0A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0x10D14120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43243==    by 0xBB1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0xBB55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43243==    by 0x5251446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43243==    by 0xBA55BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43243==    by 0xBA55C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43243==    by 0x4012D73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43243==    by 0x400DB01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43243==    by 0x4010BCE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43243==    by 0x40109F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43243==    by 0x401119B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43243==    by 0x400BB38: main (TestMultiLobeAirwayGenerator.cpp:19)
==43243== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43243== 
==43243== HEAP SUMMARY:
==43243==     in use at exit: 103,609 bytes in 583 blocks
==43243==   total heap usage: 112,145 allocs, 111,562 frees, 64,053,788 bytes allocated
==43243== 
==43243== LEAK SUMMARY:
==43243==    definitely lost: 0 bytes in 0 blocks
==43243==    indirectly lost: 0 bytes in 0 blocks
==43243==      possibly lost: 0 bytes in 0 blocks
==43243==    still reachable: 12,093 bytes in 44 blocks
==43243==         suppressed: 91,516 bytes in 539 blocks
==43243== Reachable blocks (those to which a pointer was found) are not shown.
==43243== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43243== 
==43243== For lists of detected and suppressed errors, rerun with: -s
==43243== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 36 from 36)