==26790== Memcheck, a memory error detector ==26790== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==26790== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==26790== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestPCLDUFactorisation -malloc_debug -malloc_dump -memory_info ==26790== Parent PID: 26574 ==26790== ==26790== ==26790== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==26790== Open file descriptor 10: /dev/shm/open_mpi.0000 ==26790== at 0x662D536: __open_nocancel (open64_nocancel.c:39) ==26790== by 0x65B1BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==26790== by 0xA1AF89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1AFA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1AEC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1AEF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA07E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0x8D370E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D6E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x51B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26790== by 0x61CCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26790== by 0x61CCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26790== by 0x400C610: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26790== by 0x4007FE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26790== by 0x400A4C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26790== by 0x400A360: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26790== by 0x400AA0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26790== by 0x40067D2: main (TestPCLDUFactorisation.cpp:18) ==26790== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26790== Open file descriptor 9: ==26790== at 0x663B96B: eventfd (syscall-template.S:120) ==26790== by 0xA64F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA1740D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1741E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA07E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0x8D370E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D6E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x51B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26790== by 0x61CCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26790== by 0x61CCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26790== by 0x400C610: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26790== by 0x4007FE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26790== by 0x400A4C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26790== by 0x400A360: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26790== by 0x400AA0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26790== by 0x40067D2: main (TestPCLDUFactorisation.cpp:18) ==26790== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26790== Open file descriptor 8: ==26790== at 0x662C2BB: pipe2 (syscall-template.S:120) ==26790== by 0xA64EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA651579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA651774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA1740D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1741E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA07E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0x8D370E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D6E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x51B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26790== by 0x61CCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26790== by 0x61CCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26790== by 0x400C610: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26790== by 0x4007FE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26790== by 0x400A4C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26790== by 0x400A360: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26790== by 0x400AA0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26790== by 0x40067D2: main (TestPCLDUFactorisation.cpp:18) ==26790== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26790== Open file descriptor 7: ==26790== at 0x662C2BB: pipe2 (syscall-template.S:120) ==26790== by 0xA64EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA651579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA651774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA1740D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1741E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA07E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0x8D370E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D6E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x51B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26790== by 0x61CCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26790== by 0x61CCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26790== by 0x400C610: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26790== by 0x4007FE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26790== by 0x400A4C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26790== by 0x400A360: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26790== by 0x400AA0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26790== by 0x40067D2: main (TestPCLDUFactorisation.cpp:18) ==26790== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26790== Open file descriptor 6: ==26790== at 0x663C46B: epoll_create1 (syscall-template.S:120) ==26790== by 0xA6516FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA64D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26790== by 0xA1740D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA1741E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0xA07E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26790== by 0x8D370E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D3418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x8D6E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26790== by 0x51B6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26790== by 0x61CCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26790== by 0x61CCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26790== by 0x400C610: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26790== by 0x4007FE3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26790== by 0x400A4C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26790== by 0x400A360: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26790== by 0x400AA0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26790== by 0x40067D2: main (TestPCLDUFactorisation.cpp:18) ==26790== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26790== ==26790== HEAP SUMMARY: ==26790== in use at exit: 99,431 bytes in 576 blocks ==26790== total heap usage: 34,924 allocs, 34,348 frees, 36,597,232 bytes allocated ==26790== ==26790== LEAK SUMMARY: ==26790== definitely lost: 0 bytes in 0 blocks ==26790== indirectly lost: 0 bytes in 0 blocks ==26790== possibly lost: 0 bytes in 0 blocks ==26790== still reachable: 10,081 bytes in 40 blocks ==26790== suppressed: 89,350 bytes in 536 blocks ==26790== Reachable blocks (those to which a pointer was found) are not shown. ==26790== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26790== ==26790== For lists of detected and suppressed errors, rerun with: -s ==26790== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)