==26748== Memcheck, a memory error detector ==26748== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==26748== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==26748== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestParallelWriterPerformance -malloc_debug -malloc_dump -memory_info ==26748== Parent PID: 26574 ==26748== ==26748== ==26748== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==26748== Open file descriptor 10: /dev/shm/open_mpi.0000 ==26748== at 0x6612536: __open_nocancel (open64_nocancel.c:39) ==26748== by 0x6596BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==26748== by 0x9B9189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B91A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B90C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B90F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9A60159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x67990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x67D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x519B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26748== by 0x61B1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26748== by 0x61B1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26748== by 0x400B0D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26748== by 0x4006E63: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26748== by 0x4009106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26748== by 0x4008FA3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26748== by 0x4009651: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26748== by 0x4005652: main (TestParallelWriterPerformance.cpp:18) ==26748== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26748== Open file descriptor 9: ==26748== at 0x662096B: eventfd (syscall-template.S:120) ==26748== by 0x9BF1188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9B560D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B561E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9A60120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x67990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x67D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x519B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26748== by 0x61B1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26748== by 0x61B1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26748== by 0x400B0D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26748== by 0x4006E63: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26748== by 0x4009106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26748== by 0x4008FA3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26748== by 0x4009651: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26748== by 0x4005652: main (TestParallelWriterPerformance.cpp:18) ==26748== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26748== Open file descriptor 8: ==26748== at 0x66112BB: pipe2 (syscall-template.S:120) ==26748== by 0x9BF0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BF3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BF3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9B560D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B561E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9A60120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x67990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x67D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x519B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26748== by 0x61B1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26748== by 0x61B1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26748== by 0x400B0D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26748== by 0x4006E63: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26748== by 0x4009106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26748== by 0x4008FA3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26748== by 0x4009651: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26748== by 0x4005652: main (TestParallelWriterPerformance.cpp:18) ==26748== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26748== Open file descriptor 7: ==26748== at 0x66112BB: pipe2 (syscall-template.S:120) ==26748== by 0x9BF0F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BF3579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BF3774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9B560D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B561E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9A60120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x67990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x67D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x519B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26748== by 0x61B1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26748== by 0x61B1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26748== by 0x400B0D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26748== by 0x4006E63: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26748== by 0x4009106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26748== by 0x4008FA3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26748== by 0x4009651: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26748== by 0x4005652: main (TestParallelWriterPerformance.cpp:18) ==26748== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26748== Open file descriptor 4: ==26748== at 0x662146B: epoll_create1 (syscall-template.S:120) ==26748== by 0x9BF36FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9BEF8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26748== by 0x9B560D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9B561E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x9A60120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26748== by 0x67990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x679618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x67D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26748== by 0x519B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26748== by 0x61B1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26748== by 0x61B1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26748== by 0x400B0D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26748== by 0x4006E63: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26748== by 0x4009106: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26748== by 0x4008FA3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26748== by 0x4009651: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26748== by 0x4005652: main (TestParallelWriterPerformance.cpp:18) ==26748== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26748== ==26748== HEAP SUMMARY: ==26748== in use at exit: 99,438 bytes in 576 blocks ==26748== total heap usage: 25,046 allocs, 24,470 frees, 8,350,152 bytes allocated ==26748== ==26748== LEAK SUMMARY: ==26748== definitely lost: 0 bytes in 0 blocks ==26748== indirectly lost: 0 bytes in 0 blocks ==26748== possibly lost: 0 bytes in 0 blocks ==26748== still reachable: 10,081 bytes in 40 blocks ==26748== suppressed: 89,357 bytes in 536 blocks ==26748== Reachable blocks (those to which a pointer was found) are not shown. ==26748== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26748== ==26748== For lists of detected and suppressed errors, rerun with: -s ==26748== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)