==40331== Memcheck, a memory error detector
==40331== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==40331== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==40331== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVolumeTrackingModifier -malloc_debug -malloc_dump -memory_info
==40331== Parent PID: 26574
==40331== 
==40331== 
==40331== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==40331== Open file descriptor 10: /dev/shm/open_mpi.0000
==40331==    at 0x11739536: __open_nocancel (open64_nocancel.c:39)
==40331==    by 0x116BDBE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==40331==    by 0x1651189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x16511A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x16510C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x16510F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x163E0159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x11F860E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11FBD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x12B9D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==40331==    by 0xF001BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==40331==    by 0xF001C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==40331==    by 0x40F4124: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==40331==    by 0x40EB7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==40331==    by 0x40EF5CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==40331==    by 0x40EF461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==40331==    by 0x40EFB5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==40331==    by 0x40E9BF8: main (TestVolumeTrackingModifier.cpp:18)
==40331== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==40331== Open file descriptor 9:
==40331==    at 0x1174796B: eventfd (syscall-template.S:120)
==40331==    by 0x16571188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x164D60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x164D61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x163E0120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x11F860E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11FBD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x12B9D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==40331==    by 0xF001BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==40331==    by 0xF001C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==40331==    by 0x40F4124: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==40331==    by 0x40EB7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==40331==    by 0x40EF5CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==40331==    by 0x40EF461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==40331==    by 0x40EFB5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==40331==    by 0x40E9BF8: main (TestVolumeTrackingModifier.cpp:18)
==40331== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==40331== Open file descriptor 8:
==40331==    at 0x117382BB: pipe2 (syscall-template.S:120)
==40331==    by 0x16570F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x16573579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x16573774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x164D60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x164D61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x163E0120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x11F860E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11FBD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x12B9D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==40331==    by 0xF001BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==40331==    by 0xF001C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==40331==    by 0x40F4124: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==40331==    by 0x40EB7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==40331==    by 0x40EF5CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==40331==    by 0x40EF461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==40331==    by 0x40EFB5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==40331==    by 0x40E9BF8: main (TestVolumeTrackingModifier.cpp:18)
==40331== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==40331== Open file descriptor 7:
==40331==    at 0x117382BB: pipe2 (syscall-template.S:120)
==40331==    by 0x16570F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x16573579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x16573774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x164D60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x164D61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x163E0120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x11F860E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11FBD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x12B9D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==40331==    by 0xF001BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==40331==    by 0xF001C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==40331==    by 0x40F4124: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==40331==    by 0x40EB7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==40331==    by 0x40EF5CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==40331==    by 0x40EF461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==40331==    by 0x40EFB5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==40331==    by 0x40E9BF8: main (TestVolumeTrackingModifier.cpp:18)
==40331== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==40331== Open file descriptor 4:
==40331==    at 0x1174846B: epoll_create1 (syscall-template.S:120)
==40331==    by 0x165736FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x1656F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==40331==    by 0x164D60D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x164D61E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x163E0120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==40331==    by 0x11F860E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11F8318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x11FBD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==40331==    by 0x12B9D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==40331==    by 0xF001BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==40331==    by 0xF001C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==40331==    by 0x40F4124: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==40331==    by 0x40EB7B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==40331==    by 0x40EF5CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==40331==    by 0x40EF461: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==40331==    by 0x40EFB5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==40331==    by 0x40E9BF8: main (TestVolumeTrackingModifier.cpp:18)
==40331== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==40331== 
==40331== HEAP SUMMARY:
==40331==     in use at exit: 101,278 bytes in 578 blocks
==40331==   total heap usage: 11,591,806 allocs, 11,591,228 frees, 1,914,548,467 bytes allocated
==40331== 
==40331== LEAK SUMMARY:
==40331==    definitely lost: 0 bytes in 0 blocks
==40331==    indirectly lost: 0 bytes in 0 blocks
==40331==      possibly lost: 0 bytes in 0 blocks
==40331==    still reachable: 11,997 bytes in 46 blocks
==40331==         suppressed: 89,281 bytes in 532 blocks
==40331== Reachable blocks (those to which a pointer was found) are not shown.
==40331== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==40331== 
==40331== For lists of detected and suppressed errors, rerun with: -s
==40331== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)