==15142== Memcheck, a memory error detector ==15142== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15142== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15142== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info ==15142== Parent PID: 14952 ==15142== ==15142== ==15142== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15142== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15142== at 0x6631536: __open_nocancel (open64_nocancel.c:39) ==15142== by 0x65B5BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15142== by 0xA1B389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1B3A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1B2C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1B2F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA082159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0x8D3B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D4049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D412C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D3818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D72627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15142== by 0x61D0BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15142== by 0x61D0C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15142== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15142== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15142== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15142== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15142== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15142== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15142== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15142== Open file descriptor 9: ==15142== at 0x663F96B: eventfd (syscall-template.S:120) ==15142== by 0xA653188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA651395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA651704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA6519F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA1780D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1781E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA082120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0x8D3B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D4049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D412C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D3818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D72627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15142== by 0x61D0BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15142== by 0x61D0C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15142== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15142== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15142== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15142== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15142== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15142== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15142== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15142== Open file descriptor 8: ==15142== at 0x66302BB: pipe2 (syscall-template.S:120) ==15142== by 0xA652F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA655579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA655774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA6518AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA1780D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1781E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA082120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0x8D3B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D4049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D412C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D3818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D72627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15142== by 0x61D0BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15142== by 0x61D0C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15142== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15142== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15142== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15142== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15142== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15142== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15142== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15142== Open file descriptor 7: ==15142== at 0x66302BB: pipe2 (syscall-template.S:120) ==15142== by 0xA652F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA655579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA655774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA6518AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA1780D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1781E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA082120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0x8D3B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D4049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D412C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D3818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D72627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15142== by 0x61D0BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15142== by 0x61D0C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15142== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15142== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15142== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15142== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15142== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15142== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15142== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15142== Open file descriptor 6: ==15142== at 0x664046B: epoll_create1 (syscall-template.S:120) ==15142== by 0xA6556FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA6518AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15142== by 0xA1780D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA1781E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0xA082120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15142== by 0x8D3B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D4049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D412C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D3818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x8D72627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15142== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15142== by 0x61D0BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15142== by 0x61D0C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15142== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15142== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15142== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15142== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15142== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15142== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15142== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15142== ==15142== HEAP SUMMARY: ==15142== in use at exit: 99,431 bytes in 576 blocks ==15142== total heap usage: 28,422 allocs, 27,846 frees, 24,620,369 bytes allocated ==15142== ==15142== LEAK SUMMARY: ==15142== definitely lost: 0 bytes in 0 blocks ==15142== indirectly lost: 0 bytes in 0 blocks ==15142== possibly lost: 0 bytes in 0 blocks ==15142== still reachable: 10,081 bytes in 40 blocks ==15142== suppressed: 89,350 bytes in 536 blocks ==15142== Reachable blocks (those to which a pointer was found) are not shown. ==15142== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15142== ==15142== For lists of detected and suppressed errors, rerun with: -s ==15142== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)