==16106== Memcheck, a memory error detector ==16106== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16106== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16106== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCodegen -malloc_debug -malloc_dump -memory_info ==16106== Parent PID: 14744 ==16106== ==16106== ==16106== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16106== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16106== at 0xA590536: __open_nocancel (open64_nocancel.c:39) ==16106== by 0xA514BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16106== by 0x11D5C89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D5CA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D5BC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D5BF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11C2B159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x9D490E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D80627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x89AF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16106== by 0x9C71BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16106== by 0x9C71C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16106== by 0x402BC95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16106== by 0x4025ACB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16106== by 0x4028FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16106== by 0x4028E2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16106== by 0x402956F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16106== by 0x4020AE2: main (TestCodegen.cpp:19) ==16106== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16106== Open file descriptor 9: ==16106== at 0xA59E96B: eventfd (syscall-template.S:120) ==16106== by 0x11DBC188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11D210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11C2B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x9D490E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D80627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x89AF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16106== by 0x9C71BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16106== by 0x9C71C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16106== by 0x402BC95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16106== by 0x4025ACB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16106== by 0x4028FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16106== by 0x4028E2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16106== by 0x402956F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16106== by 0x4020AE2: main (TestCodegen.cpp:19) ==16106== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16106== Open file descriptor 8: ==16106== at 0xA58F2BB: pipe2 (syscall-template.S:120) ==16106== by 0x11DBBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11D210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11C2B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x9D490E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D80627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x89AF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16106== by 0x9C71BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16106== by 0x9C71C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16106== by 0x402BC95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16106== by 0x4025ACB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16106== by 0x4028FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16106== by 0x4028E2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16106== by 0x402956F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16106== by 0x4020AE2: main (TestCodegen.cpp:19) ==16106== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16106== Open file descriptor 7: ==16106== at 0xA58F2BB: pipe2 (syscall-template.S:120) ==16106== by 0x11DBBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11D210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11C2B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x9D490E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D80627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x89AF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16106== by 0x9C71BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16106== by 0x9C71C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16106== by 0x402BC95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16106== by 0x4025ACB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16106== by 0x4028FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16106== by 0x4028E2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16106== by 0x402956F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16106== by 0x4020AE2: main (TestCodegen.cpp:19) ==16106== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16106== Open file descriptor 6: ==16106== at 0xA59F46B: epoll_create1 (syscall-template.S:120) ==16106== by 0x11DBE6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11DBA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16106== by 0x11D210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11D211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x11C2B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16106== by 0x9D490E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D4618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x9D80627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16106== by 0x89AF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16106== by 0x9C71BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16106== by 0x9C71C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16106== by 0x402BC95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16106== by 0x4025ACB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16106== by 0x4028FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16106== by 0x4028E2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16106== by 0x402956F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16106== by 0x4020AE2: main (TestCodegen.cpp:19) ==16106== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16106== ==16106== HEAP SUMMARY: ==16106== in use at exit: 106,853 bytes in 588 blocks ==16106== total heap usage: 920,369 allocs, 919,781 frees, 814,052,292 bytes allocated ==16106== ==16106== LEAK SUMMARY: ==16106== definitely lost: 0 bytes in 0 blocks ==16106== indirectly lost: 0 bytes in 0 blocks ==16106== possibly lost: 0 bytes in 0 blocks ==16106== still reachable: 17,588 bytes in 56 blocks ==16106== suppressed: 89,265 bytes in 532 blocks ==16106== Reachable blocks (those to which a pointer was found) are not shown. ==16106== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16106== ==16106== For lists of detected and suppressed errors, rerun with: -s ==16106== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)