==13085== Memcheck, a memory error detector ==13085== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13085== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13085== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info ==13085== Parent PID: 12982 ==13085== ==13085== ==13085== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13085== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13085== at 0x14B15536: __open_nocancel (open64_nocancel.c:39) ==13085== by 0x14A99BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13085== by 0x1A1D889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A1D8A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A1D7C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A1D7F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A0A7159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x143B00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143AD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143E7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13085== by 0x142E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13085== by 0x142E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13085== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13085== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13085== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13085== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13085== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13085== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13085== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13085== Open file descriptor 9: ==13085== at 0x14B2396B: eventfd (syscall-template.S:120) ==13085== by 0x1A238188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A236395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A236704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A2369F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A19D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A19D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A0A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x143B00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143AD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143E7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13085== by 0x142E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13085== by 0x142E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13085== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13085== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13085== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13085== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13085== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13085== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13085== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13085== Open file descriptor 8: ==13085== at 0x14B142BB: pipe2 (syscall-template.S:120) ==13085== by 0x1A237F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A23A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A23A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A2368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A19D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A19D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A0A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x143B00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143AD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143E7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13085== by 0x142E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13085== by 0x142E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13085== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13085== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13085== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13085== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13085== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13085== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13085== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13085== Open file descriptor 7: ==13085== at 0x14B142BB: pipe2 (syscall-template.S:120) ==13085== by 0x1A237F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A23A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A23A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A2368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A19D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A19D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A0A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x143B00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143AD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143E7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13085== by 0x142E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13085== by 0x142E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13085== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13085== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13085== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13085== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13085== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13085== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13085== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13085== Open file descriptor 5: ==13085== at 0x14B2446B: epoll_create1 (syscall-template.S:120) ==13085== by 0x1A23A6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A2368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13085== by 0x1A19D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A19D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x1A0A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13085== by 0x143B00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143B62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143AD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x143E7627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13085== by 0x6AE8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13085== by 0x142E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13085== by 0x142E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13085== by 0x4052113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13085== by 0x404BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13085== by 0x404EECE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13085== by 0x404ECF2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13085== by 0x404F49B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13085== by 0x4049B68: main (TestCryptDivisionRules.cpp:19) ==13085== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13085== ==13085== HEAP SUMMARY: ==13085== in use at exit: 102,557 bytes in 608 blocks ==13085== total heap usage: 36,185 allocs, 35,577 frees, 9,331,499 bytes allocated ==13085== ==13085== LEAK SUMMARY: ==13085== definitely lost: 0 bytes in 0 blocks ==13085== indirectly lost: 0 bytes in 0 blocks ==13085== possibly lost: 0 bytes in 0 blocks ==13085== still reachable: 12,005 bytes in 46 blocks ==13085== suppressed: 90,552 bytes in 562 blocks ==13085== Reachable blocks (those to which a pointer was found) are not shown. ==13085== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13085== ==13085== For lists of detected and suppressed errors, rerun with: -s ==13085== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)