==14975== Memcheck, a memory error detector ==14975== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14975== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info ==14975== Parent PID: 14952 ==14975== ==14975== ==14975== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14975== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14975== at 0x6998536: __open_nocancel (open64_nocancel.c:39) ==14975== by 0x691CBE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14975== by 0x9B2589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9B25A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9B24C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9B24F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x99F4159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x62310E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x623649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x62372C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x622E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x6268627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x520F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14975== by 0x4921BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14975== by 0x4921C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14975== by 0x400BFA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14975== by 0x4007D43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14975== by 0x4009FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14975== by 0x4009E99: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14975== by 0x400A547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14975== by 0x4006532: main (TestCwd.cpp:18) ==14975== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14975== Open file descriptor 9: ==14975== at 0x69A696B: eventfd (syscall-template.S:120) ==14975== by 0x9B85188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B83395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B83704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B839F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9AEA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9AEA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x99F4120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x62310E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x623649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x62372C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x622E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x6268627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x520F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14975== by 0x4921BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14975== by 0x4921C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14975== by 0x400BFA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14975== by 0x4007D43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14975== by 0x4009FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14975== by 0x4009E99: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14975== by 0x400A547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14975== by 0x4006532: main (TestCwd.cpp:18) ==14975== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14975== Open file descriptor 8: ==14975== at 0x69972BB: pipe2 (syscall-template.S:120) ==14975== by 0x9B84F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B87579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B87774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9AEA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9AEA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x99F4120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x62310E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x623649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x62372C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x622E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x6268627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x520F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14975== by 0x4921BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14975== by 0x4921C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14975== by 0x400BFA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14975== by 0x4007D43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14975== by 0x4009FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14975== by 0x4009E99: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14975== by 0x400A547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14975== by 0x4006532: main (TestCwd.cpp:18) ==14975== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14975== Open file descriptor 7: ==14975== at 0x69972BB: pipe2 (syscall-template.S:120) ==14975== by 0x9B84F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B87579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B87774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9AEA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9AEA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x99F4120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x62310E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x623649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x62372C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x622E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x6268627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x520F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14975== by 0x4921BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14975== by 0x4921C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14975== by 0x400BFA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14975== by 0x4007D43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14975== by 0x4009FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14975== by 0x4009E99: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14975== by 0x400A547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14975== by 0x4006532: main (TestCwd.cpp:18) ==14975== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14975== Open file descriptor 6: ==14975== at 0x69A746B: epoll_create1 (syscall-template.S:120) ==14975== by 0x9B876FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9B838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14975== by 0x9AEA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x9AEA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x99F4120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14975== by 0x62310E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x623649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x62372C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x622E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x6268627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14975== by 0x520F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14975== by 0x4921BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14975== by 0x4921C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14975== by 0x400BFA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14975== by 0x4007D43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14975== by 0x4009FFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14975== by 0x4009E99: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14975== by 0x400A547: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14975== by 0x4006532: main (TestCwd.cpp:18) ==14975== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14975== ==14975== HEAP SUMMARY: ==14975== in use at exit: 99,408 bytes in 576 blocks ==14975== total heap usage: 24,488 allocs, 23,912 frees, 8,067,102 bytes allocated ==14975== ==14975== LEAK SUMMARY: ==14975== definitely lost: 0 bytes in 0 blocks ==14975== indirectly lost: 0 bytes in 0 blocks ==14975== possibly lost: 0 bytes in 0 blocks ==14975== still reachable: 10,073 bytes in 40 blocks ==14975== suppressed: 89,335 bytes in 536 blocks ==14975== Reachable blocks (those to which a pointer was found) are not shown. ==14975== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14975== ==14975== For lists of detected and suppressed errors, rerun with: -s ==14975== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)