==14990== Memcheck, a memory error detector ==14990== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14990== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14990== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestDistributedVector -malloc_debug -malloc_dump -memory_info ==14990== Parent PID: 14952 ==14990== ==14990== ==14990== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14990== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14990== at 0x661D536: __open_nocancel (open64_nocancel.c:39) ==14990== by 0x65A1BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14990== by 0x9B5789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B57A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B56C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B56F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9A26159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x67A40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67AA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67DB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x52A9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14990== by 0x4953BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14990== by 0x4953C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14990== by 0x4023074: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14990== by 0x401DDAB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14990== by 0x4020BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14990== by 0x40209F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14990== by 0x402113D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14990== by 0x401C162: main (TestDistributedVector.cpp:19) ==14990== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14990== Open file descriptor 9: ==14990== at 0x662B96B: eventfd (syscall-template.S:120) ==14990== by 0x9BB7188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB5395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB5704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB59F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9B1C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B1C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9A26120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x67A40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67AA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67DB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x52A9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14990== by 0x4953BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14990== by 0x4953C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14990== by 0x4023074: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14990== by 0x401DDAB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14990== by 0x4020BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14990== by 0x40209F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14990== by 0x402113D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14990== by 0x401C162: main (TestDistributedVector.cpp:19) ==14990== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14990== Open file descriptor 8: ==14990== at 0x661C2BB: pipe2 (syscall-template.S:120) ==14990== by 0x9BB6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9B1C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B1C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9A26120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x67A40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67AA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67DB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x52A9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14990== by 0x4953BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14990== by 0x4953C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14990== by 0x4023074: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14990== by 0x401DDAB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14990== by 0x4020BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14990== by 0x40209F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14990== by 0x402113D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14990== by 0x401C162: main (TestDistributedVector.cpp:19) ==14990== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14990== Open file descriptor 7: ==14990== at 0x661C2BB: pipe2 (syscall-template.S:120) ==14990== by 0x9BB6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9B1C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B1C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9A26120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x67A40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67AA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67DB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x52A9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14990== by 0x4953BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14990== by 0x4953C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14990== by 0x4023074: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14990== by 0x401DDAB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14990== by 0x4020BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14990== by 0x40209F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14990== by 0x402113D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14990== by 0x401C162: main (TestDistributedVector.cpp:19) ==14990== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14990== Open file descriptor 6: ==14990== at 0x662C46B: epoll_create1 (syscall-template.S:120) ==14990== by 0x9BB96FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9BB58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14990== by 0x9B1C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9B1C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x9A26120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14990== by 0x67A40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67AA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67A118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x67DB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14990== by 0x52A9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14990== by 0x4953BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14990== by 0x4953C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14990== by 0x4023074: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14990== by 0x401DDAB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14990== by 0x4020BCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14990== by 0x40209F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14990== by 0x402113D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14990== by 0x401C162: main (TestDistributedVector.cpp:19) ==14990== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14990== ==14990== HEAP SUMMARY: ==14990== in use at exit: 99,422 bytes in 576 blocks ==14990== total heap usage: 25,914 allocs, 25,338 frees, 8,331,948 bytes allocated ==14990== ==14990== LEAK SUMMARY: ==14990== definitely lost: 0 bytes in 0 blocks ==14990== indirectly lost: 0 bytes in 0 blocks ==14990== possibly lost: 0 bytes in 0 blocks ==14990== still reachable: 10,073 bytes in 40 blocks ==14990== suppressed: 89,349 bytes in 536 blocks ==14990== Reachable blocks (those to which a pointer was found) are not shown. ==14990== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14990== ==14990== For lists of detected and suppressed errors, rerun with: -s ==14990== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)