==15210== Memcheck, a memory error detector ==15210== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15210== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15210== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestElementAttributes -malloc_debug -malloc_dump -memory_info ==15210== Parent PID: 14952 ==15210== ==15210== ==15210== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15210== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15210== at 0x69A0536: __open_nocancel (open64_nocancel.c:39) ==15210== by 0x6924BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15210== by 0xCF8789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF87A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF86C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF86F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCE56159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0x6BB60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BB318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x7B5A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15210== by 0x64FABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15210== by 0x64FAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15210== by 0x4024F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15210== by 0x401FAEB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15210== by 0x4022924: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15210== by 0x4022752: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15210== by 0x4022E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15210== by 0x401DEA2: main (TestElementAttributes.cpp:19) ==15210== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15210== Open file descriptor 9: ==15210== at 0x69AE96B: eventfd (syscall-template.S:120) ==15210== by 0xCFE9188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE7395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE7704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE79F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCF4C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF4C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCE56120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0x6BB60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BB318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x7B5A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15210== by 0x64FABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15210== by 0x64FAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15210== by 0x4024F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15210== by 0x401FAEB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15210== by 0x4022924: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15210== by 0x4022752: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15210== by 0x4022E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15210== by 0x401DEA2: main (TestElementAttributes.cpp:19) ==15210== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15210== Open file descriptor 8: ==15210== at 0x699F2BB: pipe2 (syscall-template.S:120) ==15210== by 0xCFE8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFEB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFEB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCF4C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF4C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCE56120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0x6BB60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BB318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x7B5A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15210== by 0x64FABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15210== by 0x64FAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15210== by 0x4024F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15210== by 0x401FAEB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15210== by 0x4022924: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15210== by 0x4022752: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15210== by 0x4022E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15210== by 0x401DEA2: main (TestElementAttributes.cpp:19) ==15210== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15210== Open file descriptor 7: ==15210== at 0x699F2BB: pipe2 (syscall-template.S:120) ==15210== by 0xCFE8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFEB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFEB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCF4C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF4C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCE56120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0x6BB60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BB318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x7B5A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15210== by 0x64FABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15210== by 0x64FAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15210== by 0x4024F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15210== by 0x401FAEB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15210== by 0x4022924: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15210== by 0x4022752: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15210== by 0x4022E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15210== by 0x401DEA2: main (TestElementAttributes.cpp:19) ==15210== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15210== Open file descriptor 6: ==15210== at 0x69AF46B: epoll_create1 (syscall-template.S:120) ==15210== by 0xCFEB6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCFE78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15210== by 0xCF4C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCF4C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0xCE56120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15210== by 0x6BB60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BBC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BB318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x6BED627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15210== by 0x7B5A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15210== by 0x64FABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15210== by 0x64FAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15210== by 0x4024F54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15210== by 0x401FAEB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15210== by 0x4022924: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15210== by 0x4022752: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15210== by 0x4022E97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15210== by 0x401DEA2: main (TestElementAttributes.cpp:19) ==15210== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15210== ==15210== HEAP SUMMARY: ==15210== in use at exit: 101,242 bytes in 580 blocks ==15210== total heap usage: 26,882 allocs, 26,302 frees, 8,396,858 bytes allocated ==15210== ==15210== LEAK SUMMARY: ==15210== definitely lost: 0 bytes in 0 blocks ==15210== indirectly lost: 0 bytes in 0 blocks ==15210== possibly lost: 0 bytes in 0 blocks ==15210== still reachable: 11,893 bytes in 44 blocks ==15210== suppressed: 89,349 bytes in 536 blocks ==15210== Reachable blocks (those to which a pointer was found) are not shown. ==15210== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15210== ==15210== For lists of detected and suppressed errors, rerun with: -s ==15210== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)