==29566== Memcheck, a memory error detector
==29566== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==29566== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==29566== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==29566== Parent PID: 14764
==29566== 
==29566== 
==29566== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==29566== Open file descriptor 10: /dev/shm/open_mpi.0000
==29566==    at 0x13287536: __open_nocancel (open64_nocancel.c:39)
==29566==    by 0x1320BBE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==29566==    by 0x1880C89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x1880CA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x1880BC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x1880BF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x186DB159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x107AC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107A918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107E3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0xF78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29566==    by 0xEE9CBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29566==    by 0xEE9CC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29566==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==29566==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29566==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29566==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29566==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29566==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==29566== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29566== Open file descriptor 9:
==29566==    at 0x1329596B: eventfd (syscall-template.S:120)
==29566==    by 0x1886C188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x187D10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x187D11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x186DB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x107AC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107A918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107E3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0xF78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29566==    by 0xEE9CBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29566==    by 0xEE9CC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29566==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==29566==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29566==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29566==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29566==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29566==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==29566== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29566== Open file descriptor 8:
==29566==    at 0x132862BB: pipe2 (syscall-template.S:120)
==29566==    by 0x1886BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x187D10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x187D11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x186DB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x107AC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107A918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107E3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0xF78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29566==    by 0xEE9CBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29566==    by 0xEE9CC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29566==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==29566==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29566==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29566==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29566==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29566==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==29566== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29566== Open file descriptor 7:
==29566==    at 0x132862BB: pipe2 (syscall-template.S:120)
==29566==    by 0x1886BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x187D10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x187D11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x186DB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x107AC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107A918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107E3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0xF78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29566==    by 0xEE9CBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29566==    by 0xEE9CC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29566==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==29566==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29566==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29566==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29566==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29566==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==29566== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29566== Open file descriptor 6:
==29566==    at 0x1329646B: epoll_create1 (syscall-template.S:120)
==29566==    by 0x1886E6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x1886A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==29566==    by 0x187D10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x187D11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x186DB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==29566==    by 0x107AC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107B22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107A918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0x107E3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==29566==    by 0xF78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==29566==    by 0xEE9CBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==29566==    by 0xEE9CC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==29566==    by 0x4020543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==29566==    by 0x401ACC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==29566==    by 0x401D7CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==29566==    by 0x401D5F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==29566==    by 0x401DD9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==29566==    by 0x4018CF8: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==29566== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==29566== 
==29566== HEAP SUMMARY:
==29566==     in use at exit: 101,351 bytes in 581 blocks
==29566==   total heap usage: 1,381,419 allocs, 1,380,838 frees, 69,582,873 bytes allocated
==29566== 
==29566== LEAK SUMMARY:
==29566==    definitely lost: 0 bytes in 0 blocks
==29566==    indirectly lost: 0 bytes in 0 blocks
==29566==      possibly lost: 0 bytes in 0 blocks
==29566==    still reachable: 11,981 bytes in 45 blocks
==29566==         suppressed: 89,370 bytes in 536 blocks
==29566== Reachable blocks (those to which a pointer was found) are not shown.
==29566== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==29566== 
==29566== For lists of detected and suppressed errors, rerun with: -s
==29566== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)