==15102== Memcheck, a memory error detector ==15102== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15102== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15102== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestWarnings -malloc_debug -malloc_dump -memory_info ==15102== Parent PID: 14952 ==15102== ==15102== ==15102== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15102== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15102== at 0x69A0536: __open_nocancel (open64_nocancel.c:39) ==15102== by 0x6924BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15102== by 0x9B2D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9B2DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9B2CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9B2CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x99FC159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x62390E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x6270627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x5217446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15102== by 0x4929BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15102== by 0x4929C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15102== by 0x400DF83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15102== by 0x40094AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15102== by 0x400BFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15102== by 0x400BDE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15102== by 0x400C527: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15102== by 0x4007872: main (TestWarnings.cpp:19) ==15102== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15102== Open file descriptor 9: ==15102== at 0x69AE96B: eventfd (syscall-template.S:120) ==15102== by 0x9B8D188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9AF20D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9AF21E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x99FC120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x62390E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x6270627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x5217446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15102== by 0x4929BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15102== by 0x4929C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15102== by 0x400DF83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15102== by 0x40094AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15102== by 0x400BFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15102== by 0x400BDE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15102== by 0x400C527: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15102== by 0x4007872: main (TestWarnings.cpp:19) ==15102== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15102== Open file descriptor 8: ==15102== at 0x699F2BB: pipe2 (syscall-template.S:120) ==15102== by 0x9B8CF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8F579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8F774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9AF20D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9AF21E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x99FC120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x62390E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x6270627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x5217446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15102== by 0x4929BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15102== by 0x4929C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15102== by 0x400DF83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15102== by 0x40094AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15102== by 0x400BFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15102== by 0x400BDE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15102== by 0x400C527: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15102== by 0x4007872: main (TestWarnings.cpp:19) ==15102== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15102== Open file descriptor 7: ==15102== at 0x699F2BB: pipe2 (syscall-template.S:120) ==15102== by 0x9B8CF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8F579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8F774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9AF20D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9AF21E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x99FC120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x62390E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x6270627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x5217446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15102== by 0x4929BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15102== by 0x4929C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15102== by 0x400DF83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15102== by 0x40094AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15102== by 0x400BFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15102== by 0x400BDE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15102== by 0x400C527: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15102== by 0x4007872: main (TestWarnings.cpp:19) ==15102== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15102== Open file descriptor 6: ==15102== at 0x69AF46B: epoll_create1 (syscall-template.S:120) ==15102== by 0x9B8F6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9B8B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15102== by 0x9AF20D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x9AF21E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x99FC120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15102== by 0x62390E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x623618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x6270627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15102== by 0x5217446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15102== by 0x4929BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15102== by 0x4929C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15102== by 0x400DF83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15102== by 0x40094AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15102== by 0x400BFB4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15102== by 0x400BDE2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15102== by 0x400C527: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15102== by 0x4007872: main (TestWarnings.cpp:19) ==15102== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15102== ==15102== HEAP SUMMARY: ==15102== in use at exit: 99,413 bytes in 576 blocks ==15102== total heap usage: 25,229 allocs, 24,653 frees, 8,193,185 bytes allocated ==15102== ==15102== LEAK SUMMARY: ==15102== definitely lost: 0 bytes in 0 blocks ==15102== indirectly lost: 0 bytes in 0 blocks ==15102== possibly lost: 0 bytes in 0 blocks ==15102== still reachable: 10,073 bytes in 40 blocks ==15102== suppressed: 89,340 bytes in 536 blocks ==15102== Reachable blocks (those to which a pointer was found) are not shown. ==15102== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15102== ==15102== For lists of detected and suppressed errors, rerun with: -s ==15102== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)