==26705== Memcheck, a memory error detector
==26705== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==26705== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==26705== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestColumnDataReaderWriter -malloc_debug -malloc_dump -memory_info
==26705== Parent PID: 25919
==26705== 
==26705== 
==26705== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==26705== Open file descriptor 10: /dev/shm/open_mpi.0000
==26705==    at 0x6A3A536: __open_nocancel (open64_nocancel.c:39)
==26705==    by 0x69BEBE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==26705==    by 0x9BC789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9BC7A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9BC6C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9BC6F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9A96159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x62D50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62D218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x630C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x51D1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26705==    by 0x61E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26705==    by 0x61E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26705==    by 0x4012389: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==26705==    by 0x400D44D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26705==    by 0x401036C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26705==    by 0x401019A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26705==    by 0x40108DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26705==    by 0x400B812: main (TestColumnDataReaderWriter.cpp:19)
==26705== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26705== Open file descriptor 9:
==26705==    at 0x6A4896B: eventfd (syscall-template.S:120)
==26705==    by 0x9C27188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C25395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C25704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C259F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9B8C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9B8C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9A96120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x62D50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62D218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x630C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x51D1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26705==    by 0x61E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26705==    by 0x61E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26705==    by 0x4012389: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==26705==    by 0x400D44D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26705==    by 0x401036C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26705==    by 0x401019A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26705==    by 0x40108DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26705==    by 0x400B812: main (TestColumnDataReaderWriter.cpp:19)
==26705== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26705== Open file descriptor 8:
==26705==    at 0x6A392BB: pipe2 (syscall-template.S:120)
==26705==    by 0x9C26F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C29579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C29774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C258AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9B8C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9B8C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9A96120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x62D50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62D218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x630C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x51D1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26705==    by 0x61E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26705==    by 0x61E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26705==    by 0x4012389: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==26705==    by 0x400D44D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26705==    by 0x401036C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26705==    by 0x401019A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26705==    by 0x40108DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26705==    by 0x400B812: main (TestColumnDataReaderWriter.cpp:19)
==26705== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26705== Open file descriptor 7:
==26705==    at 0x6A392BB: pipe2 (syscall-template.S:120)
==26705==    by 0x9C26F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C29579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C29774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C258AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9B8C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9B8C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9A96120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x62D50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62D218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x630C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x51D1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26705==    by 0x61E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26705==    by 0x61E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26705==    by 0x4012389: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==26705==    by 0x400D44D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26705==    by 0x401036C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26705==    by 0x401019A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26705==    by 0x40108DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26705==    by 0x400B812: main (TestColumnDataReaderWriter.cpp:19)
==26705== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26705== Open file descriptor 6:
==26705==    at 0x6A4946B: epoll_create1 (syscall-template.S:120)
==26705==    by 0x9C296FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9C258AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==26705==    by 0x9B8C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9B8C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x9A96120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==26705==    by 0x62D50E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DA49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62DB2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x62D218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x630C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==26705==    by 0x51D1446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==26705==    by 0x61E7BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26705==    by 0x61E7C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26705==    by 0x4012389: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==26705==    by 0x400D44D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26705==    by 0x401036C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26705==    by 0x401019A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26705==    by 0x40108DF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26705==    by 0x400B812: main (TestColumnDataReaderWriter.cpp:19)
==26705== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==26705== 
==26705== HEAP SUMMARY:
==26705==     in use at exit: 100,025 bytes in 584 blocks
==26705==   total heap usage: 41,238 allocs, 40,654 frees, 11,069,956 bytes allocated
==26705== 
==26705== LEAK SUMMARY:
==26705==    definitely lost: 0 bytes in 0 blocks
==26705==    indirectly lost: 0 bytes in 0 blocks
==26705==      possibly lost: 0 bytes in 0 blocks
==26705==    still reachable: 10,081 bytes in 40 blocks
==26705==         suppressed: 89,944 bytes in 544 blocks
==26705== Reachable blocks (those to which a pointer was found) are not shown.
==26705== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26705== 
==26705== For lists of detected and suppressed errors, rerun with: -s
==26705== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)