==43860== Memcheck, a memory error detector
==43860== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==43860== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==43860== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeWithJacobian -malloc_debug -malloc_dump -memory_info
==43860== Parent PID: 25919
==43860== 
==43860== 
==43860== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==43860== Open file descriptor 10: /dev/shm/open_mpi.0000
==43860==    at 0xA3B9536: __open_nocancel (open64_nocancel.c:39)
==43860==    by 0xA33DBE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==43860==    by 0x11D1989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11D19A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11D18C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11D18F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11BE8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x9C520E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C5749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C582C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C4F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C89627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x8902446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43860==    by 0x9B59BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43860==    by 0x9B59C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43860==    by 0x400F843: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43860==    by 0x400B263: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43860==    by 0x400D506: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43860==    by 0x400D3A3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43860==    by 0x400DA51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43860==    by 0x4009A52: main (TestCvodeWithJacobian.cpp:18)
==43860== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43860== Open file descriptor 9:
==43860==    at 0xA3C796B: eventfd (syscall-template.S:120)
==43860==    by 0x11D79188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D77395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D77704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D779F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11CDE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11CDE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11BE8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x9C520E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C5749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C582C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C4F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C89627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x8902446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43860==    by 0x9B59BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43860==    by 0x9B59C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43860==    by 0x400F843: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43860==    by 0x400B263: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43860==    by 0x400D506: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43860==    by 0x400D3A3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43860==    by 0x400DA51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43860==    by 0x4009A52: main (TestCvodeWithJacobian.cpp:18)
==43860== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43860== Open file descriptor 8:
==43860==    at 0xA3B82BB: pipe2 (syscall-template.S:120)
==43860==    by 0x11D78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11CDE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11CDE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11BE8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x9C520E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C5749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C582C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C4F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C89627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x8902446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43860==    by 0x9B59BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43860==    by 0x9B59C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43860==    by 0x400F843: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43860==    by 0x400B263: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43860==    by 0x400D506: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43860==    by 0x400D3A3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43860==    by 0x400DA51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43860==    by 0x4009A52: main (TestCvodeWithJacobian.cpp:18)
==43860== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43860== Open file descriptor 7:
==43860==    at 0xA3B82BB: pipe2 (syscall-template.S:120)
==43860==    by 0x11D78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11CDE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11CDE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11BE8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x9C520E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C5749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C582C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C4F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C89627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x8902446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43860==    by 0x9B59BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43860==    by 0x9B59C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43860==    by 0x400F843: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43860==    by 0x400B263: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43860==    by 0x400D506: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43860==    by 0x400D3A3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43860==    by 0x400DA51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43860==    by 0x4009A52: main (TestCvodeWithJacobian.cpp:18)
==43860== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43860== Open file descriptor 4:
==43860==    at 0xA3C846B: epoll_create1 (syscall-template.S:120)
==43860==    by 0x11D7B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11D778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==43860==    by 0x11CDE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11CDE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x11BE8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==43860==    by 0x9C520E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C5749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C582C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C4F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x9C89627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==43860==    by 0x8902446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==43860==    by 0x9B59BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43860==    by 0x9B59C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43860==    by 0x400F843: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==43860==    by 0x400B263: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43860==    by 0x400D506: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43860==    by 0x400D3A3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43860==    by 0x400DA51: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43860==    by 0x4009A52: main (TestCvodeWithJacobian.cpp:18)
==43860== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==43860== 
==43860== HEAP SUMMARY:
==43860==     in use at exit: 101,823 bytes in 584 blocks
==43860==   total heap usage: 53,514 allocs, 52,930 frees, 12,775,131 bytes allocated
==43860== 
==43860== LEAK SUMMARY:
==43860==    definitely lost: 0 bytes in 0 blocks
==43860==    indirectly lost: 0 bytes in 0 blocks
==43860==      possibly lost: 0 bytes in 0 blocks
==43860==    still reachable: 11,957 bytes in 44 blocks
==43860==         suppressed: 89,866 bytes in 540 blocks
==43860== Reachable blocks (those to which a pointer was found) are not shown.
==43860== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43860== 
==43860== For lists of detected and suppressed errors, rerun with: -s
==43860== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)