==27080== Memcheck, a memory error detector
==27080== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==27080== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==27080== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundaryMeshReader -malloc_debug -malloc_dump -memory_info
==27080== Parent PID: 25919
==27080== 
==27080== 
==27080== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==27080== Open file descriptor 10: /dev/shm/open_mpi.0000
==27080==    at 0xA7E5536: __open_nocancel (open64_nocancel.c:39)
==27080==    by 0xA769BE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==27080==    by 0xF80E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF80EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF80DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF80DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF6DD159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0x7DEE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DEB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7E25627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x6DCA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==27080==    by 0x64DCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==27080==    by 0x64DCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==27080==    by 0x4012813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==27080==    by 0x400D881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==27080==    by 0x401062E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==27080==    by 0x4010452: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==27080==    by 0x4010BFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==27080==    by 0x400B8B8: main (TestImmersedBoundaryMeshReader.cpp:19)
==27080== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==27080== Open file descriptor 9:
==27080==    at 0xA7F396B: eventfd (syscall-template.S:120)
==27080==    by 0xF86E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF7D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF7D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF6DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0x7DEE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DEB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7E25627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x6DCA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==27080==    by 0x64DCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==27080==    by 0x64DCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==27080==    by 0x4012813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==27080==    by 0x400D881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==27080==    by 0x401062E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==27080==    by 0x4010452: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==27080==    by 0x4010BFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==27080==    by 0x400B8B8: main (TestImmersedBoundaryMeshReader.cpp:19)
==27080== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==27080== Open file descriptor 8:
==27080==    at 0xA7E42BB: pipe2 (syscall-template.S:120)
==27080==    by 0xF86DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF870579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF870774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF7D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF7D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF6DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0x7DEE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DEB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7E25627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x6DCA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==27080==    by 0x64DCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==27080==    by 0x64DCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==27080==    by 0x4012813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==27080==    by 0x400D881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==27080==    by 0x401062E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==27080==    by 0x4010452: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==27080==    by 0x4010BFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==27080==    by 0x400B8B8: main (TestImmersedBoundaryMeshReader.cpp:19)
==27080== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==27080== Open file descriptor 7:
==27080==    at 0xA7E42BB: pipe2 (syscall-template.S:120)
==27080==    by 0xF86DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF870579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF870774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF7D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF7D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF6DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0x7DEE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DEB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7E25627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x6DCA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==27080==    by 0x64DCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==27080==    by 0x64DCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==27080==    by 0x4012813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==27080==    by 0x400D881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==27080==    by 0x401062E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==27080==    by 0x4010452: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==27080==    by 0x4010BFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==27080==    by 0x400B8B8: main (TestImmersedBoundaryMeshReader.cpp:19)
==27080== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==27080== Open file descriptor 4:
==27080==    at 0xA7F446B: epoll_create1 (syscall-template.S:120)
==27080==    by 0xF8706FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF86C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==27080==    by 0xF7D30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF7D31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0xF6DD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==27080==    by 0x7DEE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DF42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7DEB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x7E25627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==27080==    by 0x6DCA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==27080==    by 0x64DCBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==27080==    by 0x64DCC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==27080==    by 0x4012813: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==27080==    by 0x400D881: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==27080==    by 0x401062E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==27080==    by 0x4010452: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==27080==    by 0x4010BFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==27080==    by 0x400B8B8: main (TestImmersedBoundaryMeshReader.cpp:19)
==27080== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==27080== 
==27080== HEAP SUMMARY:
==27080==     in use at exit: 101,841 bytes in 588 blocks
==27080==   total heap usage: 29,036 allocs, 28,448 frees, 9,614,388 bytes allocated
==27080== 
==27080== LEAK SUMMARY:
==27080==    definitely lost: 0 bytes in 0 blocks
==27080==    indirectly lost: 0 bytes in 0 blocks
==27080==      possibly lost: 0 bytes in 0 blocks
==27080==    still reachable: 11,893 bytes in 44 blocks
==27080==         suppressed: 89,948 bytes in 544 blocks
==27080== Reachable blocks (those to which a pointer was found) are not shown.
==27080== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==27080== 
==27080== For lists of detected and suppressed errors, rerun with: -s
==27080== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)