==27424== Memcheck, a memory error detector ==27424== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==27424== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==27424== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==27424== Parent PID: 25919 ==27424== ==27424== ==27424== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==27424== Open file descriptor 10: /dev/shm/open_mpi.0000 ==27424== at 0x5014536: __open_nocancel (open64_nocancel.c:39) ==27424== by 0x4F98BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==27424== by 0xFE3E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE3EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE3DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE3DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFD0D159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xAC080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0x7975446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27424== by 0x4AD1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27424== by 0x4AD1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27424== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27424== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27424== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27424== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27424== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27424== by 0x401B012: main (TestMaterialLaws.cpp:19) ==27424== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27424== Open file descriptor 9: ==27424== at 0x502296B: eventfd (syscall-template.S:120) ==27424== by 0xFE9E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFD0D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xAC080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0x7975446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27424== by 0x4AD1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27424== by 0x4AD1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27424== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27424== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27424== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27424== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27424== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27424== by 0x401B012: main (TestMaterialLaws.cpp:19) ==27424== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27424== Open file descriptor 8: ==27424== at 0x50132BB: pipe2 (syscall-template.S:120) ==27424== by 0xFE9DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFEA0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFEA0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFD0D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xAC080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0x7975446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27424== by 0x4AD1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27424== by 0x4AD1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27424== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27424== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27424== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27424== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27424== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27424== by 0x401B012: main (TestMaterialLaws.cpp:19) ==27424== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27424== Open file descriptor 7: ==27424== at 0x50132BB: pipe2 (syscall-template.S:120) ==27424== by 0xFE9DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFEA0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFEA0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFD0D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xAC080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0x7975446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27424== by 0x4AD1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27424== by 0x4AD1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27424== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27424== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27424== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27424== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27424== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27424== by 0x401B012: main (TestMaterialLaws.cpp:19) ==27424== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27424== Open file descriptor 5: ==27424== at 0x502346B: epoll_create1 (syscall-template.S:120) ==27424== by 0xFEA06FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE9C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27424== by 0xFE030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFE031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xFD0D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27424== by 0xAC080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0xAC3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27424== by 0x7975446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27424== by 0x4AD1BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27424== by 0x4AD1C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27424== by 0x4021F8C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27424== by 0x401CC4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27424== by 0x401FA84: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27424== by 0x401F8B2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27424== by 0x401FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27424== by 0x401B012: main (TestMaterialLaws.cpp:19) ==27424== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27424== ==27424== HEAP SUMMARY: ==27424== in use at exit: 101,851 bytes in 588 blocks ==27424== total heap usage: 27,211 allocs, 26,623 frees, 8,386,292 bytes allocated ==27424== ==27424== LEAK SUMMARY: ==27424== definitely lost: 0 bytes in 0 blocks ==27424== indirectly lost: 0 bytes in 0 blocks ==27424== possibly lost: 0 bytes in 0 blocks ==27424== still reachable: 11,917 bytes in 44 blocks ==27424== suppressed: 89,934 bytes in 544 blocks ==27424== Reachable blocks (those to which a pointer was found) are not shown. ==27424== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27424== ==27424== For lists of detected and suppressed errors, rerun with: -s ==27424== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)