==45584== Memcheck, a memory error detector
==45584== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==45584== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==45584== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info
==45584== Parent PID: 25919
==45584== 
==45584== 
==45584== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==45584== Open file descriptor 10: /dev/shm/open_mpi.0000
==45584==    at 0xC605536: __open_nocancel (open64_nocancel.c:39)
==45584==    by 0xC589BE3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==45584==    by 0x10F3089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10F30A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10F2FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10F2FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10DFF159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0xC9510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC95649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC9572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC94E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC988627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xD93A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==45584==    by 0xC1BABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==45584==    by 0xC1BAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==45584==    by 0x40244B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==45584==    by 0x401E2C1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==45584==    by 0x40214BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==45584==    by 0x40212E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==45584==    by 0x4021A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==45584==    by 0x401C2F8: main (TestMonodomainPurkinjeProblem.cpp:19)
==45584== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==45584== Open file descriptor 9:
==45584==    at 0xC61396B: eventfd (syscall-template.S:120)
==45584==    by 0x10F92188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F90395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F90704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F909F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10EF50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10EF51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10DFF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0xC9510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC95649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC9572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC94E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC988627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xD93A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==45584==    by 0xC1BABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==45584==    by 0xC1BAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==45584==    by 0x40244B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==45584==    by 0x401E2C1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==45584==    by 0x40214BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==45584==    by 0x40212E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==45584==    by 0x4021A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==45584==    by 0x401C2F8: main (TestMonodomainPurkinjeProblem.cpp:19)
==45584== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==45584== Open file descriptor 8:
==45584==    at 0xC6042BB: pipe2 (syscall-template.S:120)
==45584==    by 0x10F91F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F94579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F94774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F908AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10EF50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10EF51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10DFF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0xC9510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC95649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC9572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC94E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC988627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xD93A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==45584==    by 0xC1BABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==45584==    by 0xC1BAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==45584==    by 0x40244B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==45584==    by 0x401E2C1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==45584==    by 0x40214BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==45584==    by 0x40212E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==45584==    by 0x4021A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==45584==    by 0x401C2F8: main (TestMonodomainPurkinjeProblem.cpp:19)
==45584== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==45584== Open file descriptor 7:
==45584==    at 0xC6042BB: pipe2 (syscall-template.S:120)
==45584==    by 0x10F91F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F94579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F94774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F908AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10EF50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10EF51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10DFF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0xC9510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC95649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC9572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC94E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC988627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xD93A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==45584==    by 0xC1BABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==45584==    by 0xC1BAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==45584==    by 0x40244B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==45584==    by 0x401E2C1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==45584==    by 0x40214BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==45584==    by 0x40212E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==45584==    by 0x4021A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==45584==    by 0x401C2F8: main (TestMonodomainPurkinjeProblem.cpp:19)
==45584== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==45584== Open file descriptor 6:
==45584==    at 0xC61446B: epoll_create1 (syscall-template.S:120)
==45584==    by 0x10F946FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10F908AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==45584==    by 0x10EF50D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10EF51E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0x10DFF120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==45584==    by 0xC9510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC95649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC9572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC94E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xC988627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==45584==    by 0xD93A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==45584==    by 0xC1BABE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==45584==    by 0xC1BAC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==45584==    by 0x40244B4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==45584==    by 0x401E2C1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==45584==    by 0x40214BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==45584==    by 0x40212E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==45584==    by 0x4021A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==45584==    by 0x401C2F8: main (TestMonodomainPurkinjeProblem.cpp:19)
==45584== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==45584== 
==45584== HEAP SUMMARY:
==45584==     in use at exit: 102,263 bytes in 593 blocks
==45584==   total heap usage: 1,204,204 allocs, 1,203,611 frees, 1,280,524,425 bytes allocated
==45584== 
==45584== LEAK SUMMARY:
==45584==    definitely lost: 0 bytes in 0 blocks
==45584==    indirectly lost: 0 bytes in 0 blocks
==45584==      possibly lost: 0 bytes in 0 blocks
==45584==    still reachable: 11,957 bytes in 44 blocks
==45584==         suppressed: 90,306 bytes in 549 blocks
==45584== Reachable blocks (those to which a pointer was found) are not shown.
==45584== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==45584== 
==45584== For lists of detected and suppressed errors, rerun with: -s
==45584== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 66 from 34)