==26745== Memcheck, a memory error detector ==26745== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==26745== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==26745== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestNonlinearSolvers -malloc_debug -malloc_dump -memory_info ==26745== Parent PID: 25919 ==26745== ==26745== ==26745== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==26745== Open file descriptor 10: /dev/shm/open_mpi.0000 ==26745== at 0x6630536: __open_nocancel (open64_nocancel.c:39) ==26745== by 0x65B4BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==26745== by 0xA1B289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1B2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1B1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1B1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA081159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0x8D3A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D402C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D71627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x51B9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26745== by 0x61CFBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26745== by 0x61CFC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26745== by 0x400D4D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26745== by 0x4008A13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26745== by 0x400B440: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26745== by 0x400B26E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26745== by 0x400B9B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26745== by 0x4006712: main (TestNonlinearSolvers.cpp:19) ==26745== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26745== Open file descriptor 9: ==26745== at 0x663E96B: eventfd (syscall-template.S:120) ==26745== by 0xA652188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA650395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA650704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA6509F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA1770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA081120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0x8D3A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D402C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D71627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x51B9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26745== by 0x61CFBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26745== by 0x61CFC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26745== by 0x400D4D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26745== by 0x4008A13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26745== by 0x400B440: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26745== by 0x400B26E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26745== by 0x400B9B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26745== by 0x4006712: main (TestNonlinearSolvers.cpp:19) ==26745== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26745== Open file descriptor 8: ==26745== at 0x662F2BB: pipe2 (syscall-template.S:120) ==26745== by 0xA651F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA654579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA654774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA6508AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA1770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA081120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0x8D3A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D402C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D71627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x51B9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26745== by 0x61CFBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26745== by 0x61CFC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26745== by 0x400D4D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26745== by 0x4008A13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26745== by 0x400B440: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26745== by 0x400B26E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26745== by 0x400B9B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26745== by 0x4006712: main (TestNonlinearSolvers.cpp:19) ==26745== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26745== Open file descriptor 7: ==26745== at 0x662F2BB: pipe2 (syscall-template.S:120) ==26745== by 0xA651F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA654579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA654774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA6508AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA1770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA081120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0x8D3A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D402C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D71627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x51B9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26745== by 0x61CFBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26745== by 0x61CFC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26745== by 0x400D4D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26745== by 0x4008A13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26745== by 0x400B440: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26745== by 0x400B26E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26745== by 0x400B9B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26745== by 0x4006712: main (TestNonlinearSolvers.cpp:19) ==26745== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26745== Open file descriptor 6: ==26745== at 0x663F46B: epoll_create1 (syscall-template.S:120) ==26745== by 0xA6546FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA6508AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==26745== by 0xA1770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA1771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0xA081120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==26745== by 0x8D3A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D402C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D3718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x8D71627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==26745== by 0x51B9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==26745== by 0x61CFBE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26745== by 0x61CFC33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26745== by 0x400D4D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26745== by 0x4008A13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26745== by 0x400B440: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26745== by 0x400B26E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26745== by 0x400B9B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26745== by 0x4006712: main (TestNonlinearSolvers.cpp:19) ==26745== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==26745== ==26745== HEAP SUMMARY: ==26745== in use at exit: 100,019 bytes in 584 blocks ==26745== total heap usage: 57,337 allocs, 56,753 frees, 14,747,687 bytes allocated ==26745== ==26745== LEAK SUMMARY: ==26745== definitely lost: 0 bytes in 0 blocks ==26745== indirectly lost: 0 bytes in 0 blocks ==26745== possibly lost: 0 bytes in 0 blocks ==26745== still reachable: 10,081 bytes in 40 blocks ==26745== suppressed: 89,938 bytes in 544 blocks ==26745== Reachable blocks (those to which a pointer was found) are not shown. ==26745== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26745== ==26745== For lists of detected and suppressed errors, rerun with: -s ==26745== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)