==45760== Memcheck, a memory error detector ==45760== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==45760== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==45760== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRestitutionStimuli -malloc_debug -malloc_dump -memory_info ==45760== Parent PID: 25919 ==45760== ==45760== ==45760== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==45760== Open file descriptor 10: /dev/shm/open_mpi.0000 ==45760== at 0xA1CE536: __open_nocancel (open64_nocancel.c:39) ==45760== by 0xA152BE3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==45760== by 0x11D2889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11D28A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11D27C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11D27F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11BF7159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x9A670E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A9E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x897B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==45760== by 0x9991BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==45760== by 0x9991C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==45760== by 0x401A7C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==45760== by 0x40157FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==45760== by 0x401841A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==45760== by 0x4018248: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==45760== by 0x401898D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==45760== by 0x4013BC2: main (TestRestitutionStimuli.cpp:19) ==45760== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==45760== Open file descriptor 9: ==45760== at 0xA1DC96B: eventfd (syscall-template.S:120) ==45760== by 0x11D88188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D86395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D86704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D869F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11CED0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11CED1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11BF7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x9A670E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A9E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x897B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==45760== by 0x9991BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==45760== by 0x9991C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==45760== by 0x401A7C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==45760== by 0x40157FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==45760== by 0x401841A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==45760== by 0x4018248: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==45760== by 0x401898D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==45760== by 0x4013BC2: main (TestRestitutionStimuli.cpp:19) ==45760== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==45760== Open file descriptor 8: ==45760== at 0xA1CD2BB: pipe2 (syscall-template.S:120) ==45760== by 0x11D87F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D8A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D8A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D868AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11CED0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11CED1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11BF7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x9A670E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A9E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x897B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==45760== by 0x9991BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==45760== by 0x9991C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==45760== by 0x401A7C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==45760== by 0x40157FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==45760== by 0x401841A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==45760== by 0x4018248: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==45760== by 0x401898D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==45760== by 0x4013BC2: main (TestRestitutionStimuli.cpp:19) ==45760== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==45760== Open file descriptor 7: ==45760== at 0xA1CD2BB: pipe2 (syscall-template.S:120) ==45760== by 0x11D87F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D8A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D8A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D868AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11CED0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11CED1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11BF7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x9A670E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A9E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x897B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==45760== by 0x9991BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==45760== by 0x9991C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==45760== by 0x401A7C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==45760== by 0x40157FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==45760== by 0x401841A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==45760== by 0x4018248: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==45760== by 0x401898D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==45760== by 0x4013BC2: main (TestRestitutionStimuli.cpp:19) ==45760== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==45760== Open file descriptor 4: ==45760== at 0xA1DD46B: epoll_create1 (syscall-template.S:120) ==45760== by 0x11D8A6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11D868AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==45760== by 0x11CED0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11CED1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x11BF7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==45760== by 0x9A670E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A6418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x9A9E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==45760== by 0x897B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==45760== by 0x9991BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==45760== by 0x9991C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==45760== by 0x401A7C5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==45760== by 0x40157FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==45760== by 0x401841A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==45760== by 0x4018248: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==45760== by 0x401898D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==45760== by 0x4013BC2: main (TestRestitutionStimuli.cpp:19) ==45760== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==45760== ==45760== HEAP SUMMARY: ==45760== in use at exit: 101,897 bytes in 588 blocks ==45760== total heap usage: 28,706 allocs, 28,118 frees, 8,539,450 bytes allocated ==45760== ==45760== LEAK SUMMARY: ==45760== definitely lost: 0 bytes in 0 blocks ==45760== indirectly lost: 0 bytes in 0 blocks ==45760== possibly lost: 0 bytes in 0 blocks ==45760== still reachable: 11,957 bytes in 44 blocks ==45760== suppressed: 89,940 bytes in 544 blocks ==45760== Reachable blocks (those to which a pointer was found) are not shown. ==45760== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==45760== ==45760== For lists of detected and suppressed errors, rerun with: -s ==45760== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)