==27257== Memcheck, a memory error detector ==27257== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==27257== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==27257== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestDistributedTetrahedralMesh -malloc_debug -malloc_dump -memory_info ==27257== Parent PID: 27020 ==27257== ==27257== ==27257== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==27257== Open file descriptor 10: /dev/shm/open_mpi.0000 ==27257== at 0xA996536: __open_nocancel (open64_nocancel.c:39) ==27257== by 0xA91ABC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==27257== by 0xF89689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF896A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF895C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF895F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF765159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0x7EBB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EB818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EF2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x6EBC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27257== by 0x6564BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27257== by 0x6564C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27257== by 0x403A054: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27257== by 0x4031BE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27257== by 0x40355CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27257== by 0x40353F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27257== by 0x4035B9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27257== by 0x402FA08: main (TestDistributedTetrahedralMesh.cpp:19) ==27257== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27257== Open file descriptor 9: ==27257== at 0xA9A496B: eventfd (syscall-template.S:120) ==27257== by 0xF8F6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF85B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF85B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF765120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0x7EBB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EB818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EF2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x6EBC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27257== by 0x6564BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27257== by 0x6564C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27257== by 0x403A054: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27257== by 0x4031BE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27257== by 0x40355CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27257== by 0x40353F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27257== by 0x4035B9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27257== by 0x402FA08: main (TestDistributedTetrahedralMesh.cpp:19) ==27257== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27257== Open file descriptor 8: ==27257== at 0xA9952BB: pipe2 (syscall-template.S:120) ==27257== by 0xF8F5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF85B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF85B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF765120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0x7EBB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EB818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EF2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x6EBC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27257== by 0x6564BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27257== by 0x6564C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27257== by 0x403A054: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27257== by 0x4031BE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27257== by 0x40355CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27257== by 0x40353F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27257== by 0x4035B9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27257== by 0x402FA08: main (TestDistributedTetrahedralMesh.cpp:19) ==27257== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27257== Open file descriptor 7: ==27257== at 0xA9952BB: pipe2 (syscall-template.S:120) ==27257== by 0xF8F5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF85B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF85B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF765120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0x7EBB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EB818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EF2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x6EBC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27257== by 0x6564BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27257== by 0x6564C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27257== by 0x403A054: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27257== by 0x4031BE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27257== by 0x40355CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27257== by 0x40353F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27257== by 0x4035B9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27257== by 0x402FA08: main (TestDistributedTetrahedralMesh.cpp:19) ==27257== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27257== Open file descriptor 6: ==27257== at 0xA9A546B: epoll_create1 (syscall-template.S:120) ==27257== by 0xF8F86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF8F48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27257== by 0xF85B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF85B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0xF765120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27257== by 0x7EBB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EC12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EB818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x7EF2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27257== by 0x6EBC446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27257== by 0x6564BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27257== by 0x6564C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27257== by 0x403A054: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27257== by 0x4031BE1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27257== by 0x40355CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27257== by 0x40353F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27257== by 0x4035B9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27257== by 0x402FA08: main (TestDistributedTetrahedralMesh.cpp:19) ==27257== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27257== ==27257== HEAP SUMMARY: ==27257== in use at exit: 103,804 bytes in 581 blocks ==27257== total heap usage: 3,205,210 allocs, 3,204,629 frees, 122,548,126 bytes allocated ==27257== ==27257== LEAK SUMMARY: ==27257== definitely lost: 0 bytes in 0 blocks ==27257== indirectly lost: 0 bytes in 0 blocks ==27257== possibly lost: 0 bytes in 0 blocks ==27257== still reachable: 14,445 bytes in 45 blocks ==27257== suppressed: 89,359 bytes in 536 blocks ==27257== Reachable blocks (those to which a pointer was found) are not shown. ==27257== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27257== ==27257== For lists of detected and suppressed errors, rerun with: -s ==27257== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)