==27888== Memcheck, a memory error detector ==27888== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==27888== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==27888== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info ==27888== Parent PID: 27020 ==27888== ==27888== ==27888== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==27888== Open file descriptor 10: /dev/shm/open_mpi.0000 ==27888== at 0x8F53536: __open_nocancel (open64_nocancel.c:39) ==27888== by 0x8ED7BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==27888== by 0xD72789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD727A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD726C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD726F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD5F6159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0x91CF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91CC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x9206627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0xA1BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27888== by 0x6860BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27888== by 0x6860C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27888== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27888== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27888== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27888== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27888== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27888== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==27888== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27888== Open file descriptor 9: ==27888== at 0x8F6196B: eventfd (syscall-template.S:120) ==27888== by 0xD787188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD785395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD785704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD7859F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD6EC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD6EC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD5F6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0x91CF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91CC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x9206627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0xA1BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27888== by 0x6860BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27888== by 0x6860C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27888== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27888== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27888== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27888== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27888== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27888== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==27888== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27888== Open file descriptor 8: ==27888== at 0x8F522BB: pipe2 (syscall-template.S:120) ==27888== by 0xD786F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD789579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD789774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD7858AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD6EC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD6EC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD5F6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0x91CF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91CC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x9206627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0xA1BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27888== by 0x6860BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27888== by 0x6860C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27888== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27888== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27888== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27888== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27888== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27888== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==27888== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27888== Open file descriptor 7: ==27888== at 0x8F522BB: pipe2 (syscall-template.S:120) ==27888== by 0xD786F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD789579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD789774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD7858AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD6EC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD6EC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD5F6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0x91CF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91CC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x9206627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0xA1BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27888== by 0x6860BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27888== by 0x6860C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27888== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27888== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27888== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27888== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27888== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27888== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==27888== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27888== Open file descriptor 6: ==27888== at 0x8F6246B: epoll_create1 (syscall-template.S:120) ==27888== by 0xD7896FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD7858AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==27888== by 0xD6EC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD6EC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0xD5F6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==27888== by 0x91CF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91D52C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x91CC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0x9206627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==27888== by 0xA1BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==27888== by 0x6860BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27888== by 0x6860C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27888== by 0x4015A04: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27888== by 0x40109E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27888== by 0x401344E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27888== by 0x4013272: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27888== by 0x4013A1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27888== by 0x400EA18: main (TestQuadraturePointsGroup.cpp:19) ==27888== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==27888== ==27888== HEAP SUMMARY: ==27888== in use at exit: 101,263 bytes in 580 blocks ==27888== total heap usage: 27,799 allocs, 27,219 frees, 8,821,283 bytes allocated ==27888== ==27888== LEAK SUMMARY: ==27888== definitely lost: 0 bytes in 0 blocks ==27888== indirectly lost: 0 bytes in 0 blocks ==27888== possibly lost: 0 bytes in 0 blocks ==27888== still reachable: 11,909 bytes in 44 blocks ==27888== suppressed: 89,354 bytes in 536 blocks ==27888== Reachable blocks (those to which a pointer was found) are not shown. ==27888== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27888== ==27888== For lists of detected and suppressed errors, rerun with: -s ==27888== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)