==42882== Memcheck, a memory error detector
==42882== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==42882== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==42882== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info
==42882== Parent PID: 27020
==42882== 
==42882== 
==42882== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==42882== Open file descriptor 10: /dev/shm/open_mpi.0000
==42882==    at 0x14D37536: __open_nocancel (open64_nocancel.c:39)
==42882==    by 0x14CBBBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==42882==    by 0x1A22F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A22FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A22EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A22EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A0FE159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x145D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x14607627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==42882==    by 0x14507BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==42882==    by 0x14507C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==42882==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==42882==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==42882==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==42882==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==42882==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==42882==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==42882== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==42882== Open file descriptor 9:
==42882==    at 0x14D4596B: eventfd (syscall-template.S:120)
==42882==    by 0x1A28F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A1F40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A1F41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A0FE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x145D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x14607627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==42882==    by 0x14507BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==42882==    by 0x14507C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==42882==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==42882==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==42882==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==42882==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==42882==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==42882==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==42882== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==42882== Open file descriptor 8:
==42882==    at 0x14D362BB: pipe2 (syscall-template.S:120)
==42882==    by 0x1A28EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A291579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A291774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A1F40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A1F41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A0FE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x145D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x14607627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==42882==    by 0x14507BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==42882==    by 0x14507C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==42882==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==42882==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==42882==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==42882==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==42882==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==42882==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==42882== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==42882== Open file descriptor 7:
==42882==    at 0x14D362BB: pipe2 (syscall-template.S:120)
==42882==    by 0x1A28EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A291579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A291774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A1F40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A1F41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A0FE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x145D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x14607627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==42882==    by 0x14507BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==42882==    by 0x14507C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==42882==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==42882==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==42882==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==42882==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==42882==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==42882==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==42882== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==42882== Open file descriptor 4:
==42882==    at 0x14D4646B: epoll_create1 (syscall-template.S:120)
==42882==    by 0x1A2916FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A28D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==42882==    by 0x1A1F40D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A1F41E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x1A0FE120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==42882==    by 0x145D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x145CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x14607627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==42882==    by 0x6AC9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==42882==    by 0x14507BE5: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==42882==    by 0x14507C33: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==42882==    by 0x402C6D3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==42882==    by 0x4026491: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==42882==    by 0x402984E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==42882==    by 0x4029672: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==42882==    by 0x4029E1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==42882==    by 0x40244C8: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19)
==42882== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==42882== 
==42882== HEAP SUMMARY:
==42882==     in use at exit: 101,329 bytes in 580 blocks
==42882==   total heap usage: 499,729 allocs, 499,149 frees, 217,121,017 bytes allocated
==42882== 
==42882== LEAK SUMMARY:
==42882==    definitely lost: 0 bytes in 0 blocks
==42882==    indirectly lost: 0 bytes in 0 blocks
==42882==      possibly lost: 0 bytes in 0 blocks
==42882==    still reachable: 11,957 bytes in 44 blocks
==42882==         suppressed: 89,372 bytes in 536 blocks
==42882== Reachable blocks (those to which a pointer was found) are not shown.
==42882== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==42882== 
==42882== For lists of detected and suppressed errors, rerun with: -s
==42882== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)