==26642== Memcheck, a memory error detector ==26642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==26642== Parent PID: 24856 ==26642== ==26642== ==26642== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26642== Open file descriptor 12: ==26642== at 0xF8850BD: pipe (pipe.c:29) ==26642== by 0x1A49B07D: ??? ==26642== by 0x146364CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26642== by 0xF4D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26642== by 0xF46BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26642== by 0xE162D38: PetscInitialize (pinit.c:924) ==26642== by 0xDFD1E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26642== by 0xDFD1EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26642== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26642== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26642== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26642== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26642== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26642== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26642== ==26642== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26642== at 0xF889A5C: __open_nocancel (open64_nocancel.c:39) ==26642== by 0xF80DB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26642== by 0xE009822: ??? ==26642== by 0xE00996F: ??? ==26642== by 0x146DB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26642== by 0x146DB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26642== by 0x14691922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26642== by 0x146362DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26642== by 0xF4D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26642== by 0xF46BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26642== by 0xE162D38: PetscInitialize (pinit.c:924) ==26642== by 0xDFD1E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26642== by 0xDFD1EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26642== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26642== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26642== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26642== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26642== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26642== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==26642== ==26642== Open file descriptor 145: ==26642== ==26642== ==26642== Open file descriptor 142: ==26642== ==26642== ==26642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==26642== ==26642== ==26642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26642== ==26642== ==26642== ==26642== HEAP SUMMARY: ==26642== in use at exit: 35,183 bytes in 289 blocks ==26642== total heap usage: 150,252 allocs, 149,963 frees, 18,587,755 bytes allocated ==26642== ==26642== LEAK SUMMARY: ==26642== definitely lost: 0 bytes in 0 blocks ==26642== indirectly lost: 0 bytes in 0 blocks ==26642== possibly lost: 0 bytes in 0 blocks ==26642== still reachable: 24 bytes in 2 blocks ==26642== suppressed: 35,159 bytes in 287 blocks ==26642== Reachable blocks (those to which a pointer was found) are not shown. ==26642== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26642== ==26642== For lists of detected and suppressed errors, rerun with: -s ==26642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)