==28149== Memcheck, a memory error detector ==28149== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28149== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28149== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==28149== Parent PID: 24856 ==28149== ==28149== ==28149== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28149== Open file descriptor 12: ==28149== at 0x107840BD: pipe (pipe.c:29) ==28149== by 0x1A49B07D: ??? ==28149== by 0x136024CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28149== by 0x1107D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28149== by 0x11016D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28149== by 0x111C2D38: PetscInitialize (pinit.c:924) ==28149== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28149== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28149== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28149== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28149== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28149== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28149== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28149== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==28149== ==28149== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28149== at 0x10788A5C: __open_nocancel (open64_nocancel.c:39) ==28149== by 0x1070CB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28149== by 0xFB15822: ??? ==28149== by 0xFB1596F: ??? ==28149== by 0x136A76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28149== by 0x136A7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28149== by 0x1365D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28149== by 0x136022DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28149== by 0x1107D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28149== by 0x11016D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28149== by 0x111C2D38: PetscInitialize (pinit.c:924) ==28149== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28149== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28149== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28149== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28149== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28149== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28149== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28149== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==28149== ==28149== Open file descriptor 145: ==28149== ==28149== ==28149== Open file descriptor 142: ==28149== ==28149== ==28149== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==28149== ==28149== ==28149== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28149== ==28149== ==28149== ==28149== HEAP SUMMARY: ==28149== in use at exit: 35,142 bytes in 286 blocks ==28149== total heap usage: 7,125,487 allocs, 7,125,201 frees, 6,741,453,236 bytes allocated ==28149== ==28149== LEAK SUMMARY: ==28149== definitely lost: 0 bytes in 0 blocks ==28149== indirectly lost: 0 bytes in 0 blocks ==28149== possibly lost: 0 bytes in 0 blocks ==28149== still reachable: 56 bytes in 3 blocks ==28149== suppressed: 35,086 bytes in 283 blocks ==28149== Reachable blocks (those to which a pointer was found) are not shown. ==28149== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28149== ==28149== For lists of detected and suppressed errors, rerun with: -s ==28149== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)