==28156== Memcheck, a memory error detector ==28156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==28156== Parent PID: 24856 ==28156== ==28156== ==28156== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28156== Open file descriptor 12: ==28156== at 0x106630BD: pipe (pipe.c:29) ==28156== by 0x1A49B07D: ??? ==28156== by 0x134DC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28156== by 0x10BBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28156== by 0x10B58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28156== by 0x10D46D38: PetscInitialize (pinit.c:924) ==28156== by 0xFE7AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28156== by 0xFE7AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28156== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28156== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28156== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28156== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28156== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28156== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28156== ==28156== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28156== at 0x10667A5C: __open_nocancel (open64_nocancel.c:39) ==28156== by 0x105EBB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28156== by 0xFEB2822: ??? ==28156== by 0xFEB296F: ??? ==28156== by 0x135816DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28156== by 0x13581938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28156== by 0x13537922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28156== by 0x134DC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28156== by 0x10BBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28156== by 0x10B58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28156== by 0x10D46D38: PetscInitialize (pinit.c:924) ==28156== by 0xFE7AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28156== by 0xFE7AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28156== by 0x135804: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28156== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28156== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28156== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28156== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28156== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28156== ==28156== Open file descriptor 145: ==28156== ==28156== ==28156== Open file descriptor 142: ==28156== ==28156== ==28156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==28156== ==28156== ==28156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28156== ==28156== ==28156== ==28156== HEAP SUMMARY: ==28156== in use at exit: 35,142 bytes in 286 blocks ==28156== total heap usage: 2,387,904 allocs, 2,387,618 frees, 463,501,105 bytes allocated ==28156== ==28156== LEAK SUMMARY: ==28156== definitely lost: 0 bytes in 0 blocks ==28156== indirectly lost: 0 bytes in 0 blocks ==28156== possibly lost: 0 bytes in 0 blocks ==28156== still reachable: 56 bytes in 3 blocks ==28156== suppressed: 35,086 bytes in 283 blocks ==28156== Reachable blocks (those to which a pointer was found) are not shown. ==28156== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28156== ==28156== For lists of detected and suppressed errors, rerun with: -s ==28156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 30 from 30)