==41122== Memcheck, a memory error detector ==41122== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41122== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41122== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningSemBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41122== Parent PID: 24856 ==41122== ==41122== ==41122== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41122== Open file descriptor 12: ==41122== at 0x102C40BD: pipe (pipe.c:29) ==41122== by 0x1A49C07D: ??? ==41122== by 0x134F74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41122== by 0x10BBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41122== by 0x10B58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41122== by 0x10D46D38: PetscInitialize (pinit.c:924) ==41122== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41122== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41122== by 0x13851A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41122== by 0x133B73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41122== by 0x136112: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41122== by 0x13600D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41122== by 0x136621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41122== by 0x132375: main (TestRunningSemBasedSimulationsTutorial.cpp:18) ==41122== ==41122== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41122== at 0x102C8A5C: __open_nocancel (open64_nocancel.c:39) ==41122== by 0x1024CB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41122== by 0xFB15822: ??? ==41122== by 0xFB1596F: ??? ==41122== by 0x1359C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41122== by 0x1359C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41122== by 0x13552922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41122== by 0x134F72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41122== by 0x10BBF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41122== by 0x10B58D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41122== by 0x10D46D38: PetscInitialize (pinit.c:924) ==41122== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41122== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41122== by 0x13851A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41122== by 0x133B73: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41122== by 0x136112: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41122== by 0x13600D: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41122== by 0x136621: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41122== by 0x132375: main (TestRunningSemBasedSimulationsTutorial.cpp:18) ==41122== ==41122== Open file descriptor 145: ==41122== ==41122== ==41122== Open file descriptor 142: ==41122== ==41122== ==41122== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningSemBasedSimulationsTutorial_valgrind.txt ==41122== ==41122== ==41122== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41122== ==41122== ==41122== ==41122== HEAP SUMMARY: ==41122== in use at exit: 35,215 bytes in 290 blocks ==41122== total heap usage: 309,098 allocs, 308,808 frees, 34,475,525 bytes allocated ==41122== ==41122== LEAK SUMMARY: ==41122== definitely lost: 0 bytes in 0 blocks ==41122== indirectly lost: 0 bytes in 0 blocks ==41122== possibly lost: 0 bytes in 0 blocks ==41122== still reachable: 56 bytes in 3 blocks ==41122== suppressed: 35,159 bytes in 287 blocks ==41122== Reachable blocks (those to which a pointer was found) are not shown. ==41122== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41122== ==41122== For lists of detected and suppressed errors, rerun with: -s ==41122== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)