==41919== Memcheck, a memory error detector ==41919== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41919== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41919== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41919== Parent PID: 24856 ==41919== ==41919== ==41919== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41919== Open file descriptor 12: ==41919== at 0x12F540BD: pipe (pipe.c:29) ==41919== by 0x1BD5B07D: ??? ==41919== by 0x16EFD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41919== by 0x1285C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41919== by 0x127F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41919== by 0x6210D38: PetscInitialize (pinit.c:924) ==41919== by 0x1271BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41919== by 0x1271BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41919== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41919== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41919== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41919== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41919== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41919== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41919== ==41919== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41919== at 0x12F58A5C: __open_nocancel (open64_nocancel.c:39) ==41919== by 0x12EDCB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41919== by 0x12753822: ??? ==41919== by 0x1275396F: ??? ==41919== by 0x16FA26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41919== by 0x16FA2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41919== by 0x16F58922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41919== by 0x16EFD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41919== by 0x1285C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41919== by 0x127F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41919== by 0x6210D38: PetscInitialize (pinit.c:924) ==41919== by 0x1271BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41919== by 0x1271BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41919== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41919== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41919== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41919== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41919== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41919== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41919== ==41919== Open file descriptor 145: ==41919== ==41919== ==41919== Open file descriptor 142: ==41919== ==41919== ==41919== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==41919== ==41919== ==41919== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41919== ==41919== ==41919== ==41919== HEAP SUMMARY: ==41919== in use at exit: 35,311 bytes in 291 blocks ==41919== total heap usage: 1,601,825 allocs, 1,601,534 frees, 127,315,859 bytes allocated ==41919== ==41919== LEAK SUMMARY: ==41919== definitely lost: 0 bytes in 0 blocks ==41919== indirectly lost: 0 bytes in 0 blocks ==41919== possibly lost: 0 bytes in 0 blocks ==41919== still reachable: 136 bytes in 4 blocks ==41919== suppressed: 35,175 bytes in 287 blocks ==41919== Reachable blocks (those to which a pointer was found) are not shown. ==41919== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41919== ==41919== For lists of detected and suppressed errors, rerun with: -s ==41919== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)