==26997== Memcheck, a memory error detector ==26997== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26997== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26997== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSemBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26997== Parent PID: 24856 ==26997== ==26997== ==26997== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26997== Open file descriptor 12: ==26997== at 0x11BF70BD: pipe (pipe.c:29) ==26997== by 0x1A49B07D: ??? ==26997== by 0x1576B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26997== by 0x1175D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26997== by 0x116F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26997== by 0x103EDD38: PetscInitialize (pinit.c:924) ==26997== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26997== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26997== by 0x1334C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26997== by 0x12E00D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26997== by 0x130C80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26997== by 0x130B20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26997== by 0x1311B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26997== by 0x12C435: main (TestSemBasedCellPopulation.cpp:19) ==26997== ==26997== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26997== at 0x11BFBA5C: __open_nocancel (open64_nocancel.c:39) ==26997== by 0x11B7FB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26997== by 0xFB15822: ??? ==26997== by 0xFB1596F: ??? ==26997== by 0x158106DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26997== by 0x15810938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26997== by 0x157C6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26997== by 0x1576B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26997== by 0x1175D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26997== by 0x116F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26997== by 0x103EDD38: PetscInitialize (pinit.c:924) ==26997== by 0xFADDE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26997== by 0xFADDEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26997== by 0x1334C1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26997== by 0x12E00D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26997== by 0x130C80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26997== by 0x130B20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26997== by 0x1311B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26997== by 0x12C435: main (TestSemBasedCellPopulation.cpp:19) ==26997== ==26997== Open file descriptor 145: ==26997== ==26997== ==26997== Open file descriptor 142: ==26997== ==26997== ==26997== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSemBasedCellPopulation_valgrind.txt ==26997== ==26997== ==26997== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26997== ==26997== ==26997== ==26997== HEAP SUMMARY: ==26997== in use at exit: 35,215 bytes in 290 blocks ==26997== total heap usage: 45,300 allocs, 45,010 frees, 8,627,316 bytes allocated ==26997== ==26997== LEAK SUMMARY: ==26997== definitely lost: 0 bytes in 0 blocks ==26997== indirectly lost: 0 bytes in 0 blocks ==26997== possibly lost: 0 bytes in 0 blocks ==26997== still reachable: 56 bytes in 3 blocks ==26997== suppressed: 35,159 bytes in 287 blocks ==26997== Reachable blocks (those to which a pointer was found) are not shown. ==26997== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26997== ==26997== For lists of detected and suppressed errors, rerun with: -s ==26997== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)