==41399== Memcheck, a memory error detector ==41399== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41399== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41399== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==41399== Parent PID: 24856 ==41399== ==41399== ==41399== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41399== Open file descriptor 12: ==41399== at 0x12F540BD: pipe (pipe.c:29) ==41399== by 0x1BD5B07D: ??? ==41399== by 0x16EFD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41399== by 0x1285C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41399== by 0x127F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41399== by 0x6210D38: PetscInitialize (pinit.c:924) ==41399== by 0x1271BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41399== by 0x1271BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41399== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41399== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41399== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41399== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41399== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41399== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41399== ==41399== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41399== at 0x12F58A5C: __open_nocancel (open64_nocancel.c:39) ==41399== by 0x12EDCB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41399== by 0x12753822: ??? ==41399== by 0x1275396F: ??? ==41399== by 0x16FA26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41399== by 0x16FA2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41399== by 0x16F58922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41399== by 0x16EFD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41399== by 0x1285C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41399== by 0x127F5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41399== by 0x6210D38: PetscInitialize (pinit.c:924) ==41399== by 0x1271BE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41399== by 0x1271BEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41399== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41399== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41399== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41399== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41399== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41399== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41399== ==41399== Open file descriptor 145: ==41399== ==41399== ==41399== Open file descriptor 142: ==41399== ==41399== ==41399== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==41399== ==41399== ==41399== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41399== ==41399== ==41399== ==41399== HEAP SUMMARY: ==41399== in use at exit: 35,311 bytes in 291 blocks ==41399== total heap usage: 38,048 allocs, 37,757 frees, 7,910,090 bytes allocated ==41399== ==41399== LEAK SUMMARY: ==41399== definitely lost: 0 bytes in 0 blocks ==41399== indirectly lost: 0 bytes in 0 blocks ==41399== possibly lost: 0 bytes in 0 blocks ==41399== still reachable: 136 bytes in 4 blocks ==41399== suppressed: 35,175 bytes in 287 blocks ==41399== Reachable blocks (those to which a pointer was found) are not shown. ==41399== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41399== ==41399== For lists of detected and suppressed errors, rerun with: -s ==41399== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)