==27267== Memcheck, a memory error detector ==27267== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27267== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27267== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==27267== Parent PID: 25496 ==27267== ==27267== ==27267== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27267== Open file descriptor 12: ==27267== at 0xEFA00BD: pipe (pipe.c:29) ==27267== by 0x196F607D: ??? ==27267== by 0x13C924CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27267== by 0xEBED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27267== by 0xEB86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27267== by 0xD87DD38: PetscInitialize (pinit.c:924) ==27267== by 0xD6ED56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27267== by 0xD6ED5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27267== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27267== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27267== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27267== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27267== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27267== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==27267== ==27267== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27267== at 0xEFA4A5C: __open_nocancel (open64_nocancel.c:39) ==27267== by 0xEF28B8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27267== by 0xD724822: ??? ==27267== by 0xD72496F: ??? ==27267== by 0x13D376DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27267== by 0x13D37938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27267== by 0x13CED922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27267== by 0x13C922DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27267== by 0xEBED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27267== by 0xEB86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27267== by 0xD87DD38: PetscInitialize (pinit.c:924) ==27267== by 0xD6ED56F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27267== by 0xD6ED5BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27267== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27267== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27267== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27267== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27267== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27267== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==27267== ==27267== Open file descriptor 145: ==27267== ==27267== ==27267== Open file descriptor 142: ==27267== ==27267== ==27267== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==27267== ==27267== ==27267== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27267== ==27267== ==27267== ==27267== HEAP SUMMARY: ==27267== in use at exit: 35,183 bytes in 289 blocks ==27267== total heap usage: 149,894 allocs, 149,605 frees, 18,554,173 bytes allocated ==27267== ==27267== LEAK SUMMARY: ==27267== definitely lost: 0 bytes in 0 blocks ==27267== indirectly lost: 0 bytes in 0 blocks ==27267== possibly lost: 0 bytes in 0 blocks ==27267== still reachable: 24 bytes in 2 blocks ==27267== suppressed: 35,159 bytes in 287 blocks ==27267== Reachable blocks (those to which a pointer was found) are not shown. ==27267== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27267== ==27267== For lists of detected and suppressed errors, rerun with: -s ==27267== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)