==25759== Memcheck, a memory error detector ==25759== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25759== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25759== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==25759== Parent PID: 25496 ==25759== ==25759== ==25759== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25759== Open file descriptor 12: ==25759== at 0x65A20BD: pipe (pipe.c:29) ==25759== by 0xAF3107D: ??? ==25759== by 0x8F4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25759== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25759== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25759== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25759== by 0x60D456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25759== by 0x60D45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25759== by 0x11BBC0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25759== by 0x117073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25759== by 0x119C2E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25759== by 0x119ACE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25759== by 0x11A165: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25759== by 0x1151F5: main (TestHdf5DataReader.cpp:19) ==25759== ==25759== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25759== at 0x65A6A5C: __open_nocancel (open64_nocancel.c:39) ==25759== by 0x652AB8F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25759== by 0x5C4D822: ??? ==25759== by 0x5C4D96F: ??? ==25759== by 0x8FF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25759== by 0x8FF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25759== by 0x8FA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25759== by 0x8F4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25759== by 0x61F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25759== by 0x618AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25759== by 0x49C3D38: PetscInitialize (pinit.c:924) ==25759== by 0x60D456F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25759== by 0x60D45BD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25759== by 0x11BBC0: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25759== by 0x117073: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25759== by 0x119C2E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25759== by 0x119ACE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25759== by 0x11A165: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25759== by 0x1151F5: main (TestHdf5DataReader.cpp:19) ==25759== ==25759== Open file descriptor 145: ==25759== ==25759== ==25759== Open file descriptor 142: ==25759== ==25759== ==25759== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==25759== ==25759== ==25759== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25759== ==25759== ==25759== ==25759== HEAP SUMMARY: ==25759== in use at exit: 35,215 bytes in 299 blocks ==25759== total heap usage: 43,190 allocs, 42,891 frees, 19,047,009 bytes allocated ==25759== ==25759== LEAK SUMMARY: ==25759== definitely lost: 0 bytes in 0 blocks ==25759== indirectly lost: 0 bytes in 0 blocks ==25759== possibly lost: 0 bytes in 0 blocks ==25759== still reachable: 24 bytes in 2 blocks ==25759== suppressed: 35,191 bytes in 297 blocks ==25759== Reachable blocks (those to which a pointer was found) are not shown. ==25759== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25759== ==25759== For lists of detected and suppressed errors, rerun with: -s ==25759== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)